Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01409 ATGGAATCCCATAGTAGTGAGGATGTTGCCAAACTGCTTCGAGCTCAAACCCATGTATGTAATCACAATTTTAGGTTGATTAGCTCCATGTCCCTTAAATGTGTTGTTGACTTAGGCATACCAGATATCATACATAATTATGGCCAAGCTATGCCACTTTCTCAACTCATTGCTTCACTACCAATCCACCCATCCAAAACCCATTTCATCTATCGCTTGATGCGAATCATGACCCATTCTGGCTTCTTCACTCAACAAAATGTCACTGAGAATGAGCTAGAAGTGAAGTATGTTCTAACTGACACATCTGTGCTACTACTGAAGAACCATCCCTTGAGTGTGACACCTTTCTTGCTTGCCATGCTTGATCCAATTTTAACAAACCCATGGCATCATTTTTCTTCTTGGTTCAAGAATGATGACCTTACACCATTTGAAACAACACACAAGGTGTTGTTTTGGGATTATGCTGGCAATGATCCCAAACTCAACAACCTATTCAATGATGGCATGGCAAGTGATGCTCGATTGATGACTAGTGTGGTGATGGAGAAATGCAAGTGGGTGTTCAATGGATTGGAGTCATTGGTTGATGTTGGGGGAGGCACGGGGACTATGGCAAAGGCCATTGCTAAATCATTCCCAAAGATGGAGTGCATTGTATTTGATTTGCCACATGTTGTTGCTGGCTTGGAAGGAAGTGAGAACCTAAAATATGTTGCTGGGAACATGTTCAACCAAATTCCTCCAGCTGATGCCATTTTGTTAAAGTGCATAATGCATGATTGGAATGACGAGGAATGTATGAAGATATTGAATAAATGCAAGGAAGCAATCACAAACAAAGGCAAAGAAGGGAAGGTGATTATCATAGACATAGTGATGGAGAATGGGAAAGAAGAAGATGAATTTGTTGAAACACAACTTTTCTTTGATATGATAATGATGGTGGGCTTTGTTGGTGGAAAAGAGAGAAATAAGAAAGAATGGGCTAAGTTGATTTCCTCTGCTGGTTTCAGTAACTACAAGATAACTCCAATTTTGGGCTTAAGGTCTCTCATTGAGATTTATCCATAG 1077 0.402 MESHSSEDVAKLLRAQTHVCNHNFRLISSMSLKCVVDLGIPDIIHNYGQAMPLSQLIASLPIHPSKTHFIYRLMRIMTHSGFFTQQNVTENELEVKYVLTDTSVLLLKNHPLSVTPFLLAMLDPILTNPWHHFSSWFKNDDLTPFETTHKVLFWDYAGNDPKLNNLFNDGMASDARLMTSVVMEKCKWVFNGLESLVDVGGGTGTMAKAIAKSFPKMECIVFDLPHVVAGLEGSENLKYVAGNMFNQIPPADAILLKCIMHDWNDEECMKILNKCKEAITNKGKEGKVIIIDIVMENGKEEDEFVETQLFFDMIMMVGFVGGKERNKKEWAKLISSAGFSNYKITPILGLRSLIEIYP. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01409 358 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Seca8g01409 358 Gene3D - 2 106 IPR036388 -
Seca8g01409 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 356 IPR029063 -
Seca8g01409 358 PANTHER O-METHYLTRANSFERASE 13 343 IPR016461 GO:0008168
Seca8g01409 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Seca8g01409 358 Gene3D Vaccinia Virus protein VP39 107 358 IPR029063 -
Seca8g01409 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Seca8g01409 358 FunFam O-methyltransferase ZRP4 108 358 - -
Seca8g01409 358 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Seca8g01409 358 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Seca8g01409 358 Pfam O-methyltransferase domain 130 340 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01409 Seca-Chr8 23716440 23718308 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01409 30 344 Monolignol Biosynthesis Gene Families AT5G54160 31.348 8.73e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01409 - K16040 gmx:100807238 582.408