Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01398 ATGGGTTCTCATGGCCAAAATATTCTTGTGCTTGTTTTGGTCACGTTGGCAACATTTGTGATCCCTAGCCATGGCATGATGCTAACTCCTGATTACTATAAGAAAGTGTGCCCTCAAGCATTGCCAATCATAAAGTCAATTGTTTTGAAGGCAATTATTCGTGAACCACGCATGGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGGTTGTGATGGATCAGTTCTACTGGATGACACCCCTTACTTCGTGGGTGAGAAGACTGCACTTCCAAATATGAACTCAATTAGAGGTTTTGAAGTTGTTGATGAAATTAAAGCAGCAGTTGACAAAGCATGCAAAGGCCCTGTAGTATCATGTGCAGATATCTTAGCAATAGCAGCTCGTGACTCTGTAGCAATATTGGGTGGTCCAAAATTTTGGTACAAAGTGTTATTAGGCAGAAAAGATGCAAGATATGCAAGCAGGGATGCTGCAAATGTCAATCTTCCACCCCCATTTTTCAACTTCTCACACCACACCATTGGATTTGCACAGTGTAGTTCCTTCAGAGACAGGATCTTCAATGACACCAACATAGACTACAAGTTTGCTTCCACTCTGCGAAAGACATGCCCAAAAATTGGCCAAAATAGCAATTTAGCACCACTTGATGCTACTCCTGCTAAATTTGACACTACTTACTATAAGGCTTTGTTGTATAAAAAGGGTCTTCTTCATTCTGATCAAGAGCTTTTGAAAGGTGATGGTTCTGAAAGTGATAGATTGGTGTATAAATACAGCAAGAATCCCTCTGCTTTTGCTAAAGACTTTGGAGTTTCCATGATTAAGATGGGTAACATGAAGCCTCTTACTGGGAAAATGGGAGACGTAAGGTGTAATTGCAGAAAAGTCAACTACTAG 909 0.4092 MGSHGQNILVLVLVTLATFVIPSHGMMLTPDYYKKVCPQALPIIKSIVLKAIIREPRMGASLLRLHFHDCFGCDGSVLLDDTPYFVGEKTALPNMNSIRGFEVVDEIKAAVDKACKGPVVSCADILAIAARDSVAILGGPKFWYKVLLGRKDARYASRDAANVNLPPPFFNFSHHTIGFAQCSSFRDRIFNDTNIDYKFASTLRKTCPKIGQNSNLAPLDATPAKFDTTYYKALLYKKGLLHSDQELLKGDGSESDRLVYKYSKNPSAFAKDFGVSMIKMGNMKPLTGKMGDVRCNCRKVNY. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01398 302 Pfam Peroxidase 48 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 Pfam Peroxidase 174 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Seca8g01398 302 CDD secretory_peroxidase 28 300 IPR033905 GO:0004601|GO:0042744
Seca8g01398 302 PRINTS Plant peroxidase signature 233 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 217 232 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 275 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PANTHER PEROXIDASE 72-RELATED 27 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 ProSiteProfiles Plant heme peroxidase family profile. 27 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 FunFam Peroxidase 172 280 - -
Seca8g01398 302 Gene3D - 281 301 - -
Seca8g01398 302 Gene3D Peroxidase, domain 2 174 280 - -
Seca8g01398 302 SUPERFAMILY Heme-dependent peroxidases 28 301 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca8g01398 302 Gene3D - 31 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01398 Seca-Chr8 23316908 23319181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01398 27 301 Peroxidase AT5G05340 50.831 2.04e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01398 K00430 - gmx:100816056 430.254