Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01397 ATGGGTTCTCATGACCAAAATATTCTTGTGCTTGTTATGGTCACGTTGGCAACATTTGTGATCCCTAGCTATGGAATACTGCTGACTCCTGATTACTATAACAAAGTGTGCCCACAGGCACAGCCAATCATAAAGTCAATTGTTTTGAAGGCAATTATTCGTGAACCACGCATTGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAACGGTTGTGATGGATCAGTTCTACTAGATGACACCCCTTTCTTCATCGGTGAAAAAACCGCACCTCCAAATAATAACTCGCTTAGAGGTTTTGAGGTGATTGATGAAATTAAAGCAGCAGTTGATAAAGCTTGCAAAGGTCCTGTGGTATCATGTGCAGATATCTTAGCCATAGCAGCTCGTGATTCTGTAGCCTTATTGGGAGGTCCACAATTTTGGTACAGAGTGTTATTAGGAAGAAGAGATGCAAGATATGCAAGCATCAAGGATACAAAAAATCTTCCTCCCCCATTTTTCAGCCTCTCAGAGCTTCTTTCCAATTTCCAATCTCATGGATTGGACCTTAAAGACCTTGTGGTTCTCTCTGGTGGACACACCATTGGATTTGCACAGTGCAGTTCCTTCAAAGACAGGATCTTCAATGACACCAACATAGACTACAAATTTGCTTCCACTCTGCGAAAGACATGCCCAAAAATTGGCCATAATAGCAATTTAGCACCACTTGATGCTACTCCTGCTAAATTTGACACTACTTACTATAAGGCTTTGTTGTACAAAAAGGGTCTTCTTCATTCTGATCAAGAGCTTTTCAAAGGTGATGGTTCTGAAAGTGATAGATTGGTGTATCTATACAGTCAGAATCCTTATGCTTTTGCTAAAGACTTTGGAGTTTCAATGATCAAGATGGGTAATATTAGGCCTCTTACTGGGAAAATGGGTGAGATAAGGTGTAATTGCAGAAAAGTCAACTAG 972 0.4064 MGSHDQNILVLVMVTLATFVIPSYGILLTPDYYNKVCPQAQPIIKSIVLKAIIREPRIGASLLRLHFHDCFVNGCDGSVLLDDTPFFIGEKTAPPNNNSLRGFEVIDEIKAAVDKACKGPVVSCADILAIAARDSVALLGGPQFWYRVLLGRRDARYASIKDTKNLPPPFFSLSELLSNFQSHGLDLKDLVVLSGGHTIGFAQCSSFKDRIFNDTNIDYKFASTLRKTCPKIGHNSNLAPLDATPAKFDTTYYKALLYKKGLLHSDQELFKGDGSESDRLVYLYSQNPYAFAKDFGVSMIKMGNIRPLTGKMGEIRCNCRKVN. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01397 323 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Seca8g01397 323 CDD secretory_peroxidase 28 322 IPR033905 GO:0004601|GO:0042744
Seca8g01397 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Seca8g01397 323 Pfam Peroxidase 48 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 FunFam Peroxidase 167 302 - -
Seca8g01397 323 ProSiteProfiles Plant heme peroxidase family profile. 27 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PANTHER PEROXIDASE 72-RELATED 27 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 SUPERFAMILY Heme-dependent peroxidases 28 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 FunFam Peroxidase 31 172 - -
Seca8g01397 323 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca8g01397 323 Gene3D - 31 320 - -
Seca8g01397 323 Gene3D Peroxidase, domain 2 167 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01397 Seca-Chr8 23301617 23304647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01397 28 323 Peroxidase AT5G05340 55.000 1.60e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01397 K00430 - gmx:100810852 458.373