LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g01396	ATGGCTTTTCATCGTTTACAATCATTCCTTGTTATGGTGGTGACATTAGTGATTCATACAAACGCACAACTCTCTCCAAATTTTTATGACAAAGTTTGCCCTCAGGCCTTGCCAGTCATAAAGTCAATTGTTCATCAAGCAATTCTTCGTGAGCGACGCATGGGAGCATCTCTGCTGCGTTTGCATTTCCATGATTGCTTCGTTAATGGGTGTGATGGATCCATTCTGTTAGATGACACACCTAACTTCACTGGAGAGAAGACTGCTTTTCCAAATGTTAATTCAGTCAGAGGATTTTCAGTGGTTGATGATATCAAAGCAGCAGTTGACAAAGCTTGCAAACACCCTGTGGTGTCATGTGCAGATATCTTAGCCATAGCAGCTCGTGATTCTGTATCCATATTGGGAGGTCCACACTATTGGTACCAAGTATTGTTAGGCAGAAGAGATGCAAGGACAGCAAGCAGGGATACTGCAAATGCCAATCTTCCTCAGCCAACTTTCAGCTTCTCACAACTCCTATCTAATTTCAATTTTGTTGGATTGGACCTAAAAGACCTTGTAGCCCTTTCTGGTGGCCACACAATTGGACTTGCTAGGTGCACTGCTTTCAGGAACAGGATTTACAATGACACAAACATAAACCCAAACTATGCAGCAGCTGTGAGGAAACAATGTCCTAGAAGTGGTGGAGATAACAATTTAGTACCATTTGATGGCACAACTGGGGTGGTTGACACTGCTTACTATTCAGCTTTGTTACATAAAAAGGGTCTTCTCCACTCTGATCAAGAATTGTTCAAGGGACAGGGGAGTGAAAGTGACAAATTGGTGCATCTATATAGTAGCAATCCACTTGCTTTTGCTAAAGACTTTGGAGCTTCAATGATTAAGATGGGTAACATAAAGCCTCTTACTGGGAATCAGGGTGAGATCAGAAGCAATTGCAGAAGGGTCAATTAG	963	0.4216	MAFHRLQSFLVMVVTLVIHTNAQLSPNFYDKVCPQALPVIKSIVHQAILRERRMGASLLRLHFHDCFVNGCDGSILLDDTPNFTGEKTAFPNVNSVRGFSVVDDIKAAVDKACKHPVVSCADILAIAARDSVSILGGPHYWYQVLLGRRDARTASRDTANANLPQPTFSFSQLLSNFNFVGLDLKDLVALSGGHTIGLARCTAFRNRIYNDTNINPNYAAAVRKQCPRSGGDNNLVPFDGTTGVVDTAYYSALLHKKGLLHSDQELFKGQGSESDKLVHLYSSNPLAFAKDFGASMIKMGNIKPLTGNQGEIRSNCRRVN.	321

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g01396	320	PANTHER	PEROXIDASE 72-RELATED	19	319	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca8g01396	320	CDD	secretory_peroxidase	23	319	IPR033905	GO:0004601\|GO:0042744
	Seca8g01396	320	ProSitePatterns	Peroxidases active site signature.	55	66	IPR019794	GO:0004601
	Seca8g01396	320	SUPERFAMILY	Heme-dependent peroxidases	23	320	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Seca8g01396	320	FunFam	Peroxidase	164	299	-	-
	Seca8g01396	320	ProSitePatterns	Peroxidases proximal heme-ligand signature.	186	196	IPR019793	-
	Seca8g01396	320	FunFam	Peroxidase	27	172	-	-
	Seca8g01396	320	PRINTS	Haem peroxidase superfamily signature	238	253	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca8g01396	320	PRINTS	Haem peroxidase superfamily signature	138	150	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca8g01396	320	PRINTS	Haem peroxidase superfamily signature	186	201	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g01396	Seca-Chr8	23221411	23224892	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g01396	22	320	Peroxidase	AT5G05340	59.272	3.25e-123	354

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g01396	K00430		-	gmx:100816056	496.123

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