Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01386 ATGGATATATCTTTGTTTAAGGTGCTCTCTAATGGCATTTCCTCATTTTTGCATTTACCATTTTCTGGAAAAATGAACTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGGTGCTTAAGGTGTTGAAGCCAATTATTGATGATGCCACTGTTTATTCTGATTTAGCTTCTAATGAAGTGCTTACTGAGCTAATCGAGGATCTTGGTCTAGCTGTTGATGAGTTGAGGGAGCTTATTGAGAATTGGAATATATTATCTAGCAAATTTTACTTTGTTATGCAAGTTGAACCATTGATATCAAGAATTCAGGTTTCAGGACTCAATATTTTACAACTGCTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGAACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGACGGTGTAGGACCCAGTCCAGAGGTCCTAACAAAGATTGCTGAGAACCTGAGCCTCAGTTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGATTGCAGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAATTGTATGCATGACCACCTTGTTATGCTTAAGCAATCTCAGAGCTCTATCCCAGAGTCAGTTCCTGCTGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGTCTCTGGTTCGCACCAACCTAATACCTAATTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTACGGAGTCTGGTTCATCCAAGGAACTTCCTGTTGCAACACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCATCCCCATTCAACTCCAGCAGGTTCCTTGGGTGGCATGGTTAATGGGCAGCATGTGGATCTTGTAAGAATATCACCCACAGGTTCAGATGATGGGTCTTCCAGCGCAGTTGAAGGGAGTATGGATTCAGTTGACCAATCATTAATGTCACCATCCAGAAATGAATCTTCCAATGCCTTGAGCTCCGAACAATGTCAAACCCATATGAGAACTGCTTCTGATTCCACTGCACTCTCTAATGCAAATTTTGCTCAAGGTACACAAGGTGATAACAACAGTGCTCCTCAACTGTCATCCAGTCCAGTCGACAATGAAGATAGTTCTGGGGAATTAAATCAGGGGTCAGATGCTGCTGCCATGCCAACTCCAAATAGAGAACCTGAGTTTTCACCCCAATTGGTGGAGCCAAGGTCTCAAATCCAAACTGTACCGCGACGGTCATTAGAGAGATTTGTTCCAAGGATAGTGTCATCTCCCTCTGTTGAAACAAGAGCTGATCCTTCTGGTACTGAAACCCATGTTCGGAAATTGGTTGAGGACTTGAAAAGCACTTCTCTTGATACTCAGAGGGAGGCAACAGCTGAACTCCGCCTTCTTGCTAAGCACAACACGGATAACCGAATTGTTATTTCAAATTGTGGAGCCATTGCCTTATTAGTTGATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACAAAACAGCAATTGCAGATGCTGGTGCAATTGGACCTTTGATTCATGTCCTTAAGACGGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTTGTTGAGGGAAACAAGATCAAGATAGGGAGGTCAGGTGCAATTGGACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGCAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACCGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCAAGAGGAAAAGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATTCTTAAACATAGTGCTCCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGGTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGCTGGGAGGGCTTGA 2394 0.4336 MDISLFKVLSNGISSFLHLPFSGKMNSEPVSKYYQKAEKVLKVLKPIIDDATVYSDLASNEVLTELIEDLGLAVDELRELIENWNILSSKFYFVMQVEPLISRIQVSGLNILQLLKVSQQCLPDDLEPETSSAIKEAIVEQLDGVGPSPEVLTKIAENLSLSSNQEVLIEAVALERLKEIAEQTEKTTEAEYIDQMISVVNCMHDHLVMLKQSQSSIPESVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQSLVRTNLIPNYTVKALIANWCESNNVKLVDPIKSTNLNQPSLLRGSTESGSSKELPVATPNGGIHQEGTSSLHHPHSTPAGSLGGMVNGQHVDLVRISPTGSDDGSSSAVEGSMDSVDQSLMSPSRNESSNALSSEQCQTHMRTASDSTALSNANFAQGTQGDNNSAPQLSSSPVDNEDSSGELNQGSDAAAMPTPNREPEFSPQLVEPRSQIQTVPRRSLERFVPRIVSSPSVETRADPSGTETHVRKLVEDLKSTSLDTQREATAELRLLAKHNTDNRIVISNCGAIALLVDLLQSTDTTIQENSVTALLNLSINDNNKTAIADAGAIGPLIHVLKTGSPEAKENSAATLFSLSVVEGNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSDNHRFLNIVLQEGAVPPLVALSQSGTPRAKEKALGLLNQFRSQRHGGAGRA. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01386 797 MobiDBLite consensus disorder prediction 304 486 - -
Seca8g01386 797 SUPERFAMILY RING/U-box 210 298 - -
Seca8g01386 797 FunFam RING-type E3 ubiquitin transferase 220 295 - -
Seca8g01386 797 FunFam RING-type E3 ubiquitin transferase 497 792 - -
Seca8g01386 797 SMART Ubox_2 224 287 IPR003613 GO:0004842|GO:0016567
Seca8g01386 797 MobiDBLite consensus disorder prediction 304 323 - -
Seca8g01386 797 MobiDBLite consensus disorder prediction 367 459 - -
Seca8g01386 797 Pfam U-box domain 221 291 IPR003613 GO:0004842|GO:0016567
Seca8g01386 797 SUPERFAMILY ARM repeat 510 786 IPR016024 -
Seca8g01386 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515
Seca8g01386 797 Pfam Armadillo/beta-catenin-like repeat 627 664 IPR000225 GO:0005515
Seca8g01386 797 Pfam Armadillo/beta-catenin-like repeat 543 582 IPR000225 GO:0005515
Seca8g01386 797 Pfam Armadillo/beta-catenin-like repeat 584 623 IPR000225 GO:0005515
Seca8g01386 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 718 IPR000225 GO:0005515
Seca8g01386 797 Gene3D - 498 792 IPR011989 -
Seca8g01386 797 ProSiteProfiles U-box domain profile. 220 294 IPR003613 GO:0004842|GO:0016567
Seca8g01386 797 Coils Coil 63 83 - -
Seca8g01386 797 CDD RING-Ubox_PUB 222 274 IPR045210 -
Seca8g01386 797 MobiDBLite consensus disorder prediction 330 344 - -
Seca8g01386 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 300 IPR013083 -
Seca8g01386 797 PANTHER U BOX DOMAIN-CONTAINING 29 785 - -
Seca8g01386 797 SMART arm_5 706 746 IPR000225 GO:0005515
Seca8g01386 797 SMART arm_5 543 583 IPR000225 GO:0005515
Seca8g01386 797 SMART arm_5 666 705 IPR000225 GO:0005515
Seca8g01386 797 SMART arm_5 584 624 IPR000225 GO:0005515
Seca8g01386 797 SMART arm_5 625 665 IPR000225 GO:0005515
Seca8g01386 797 SMART arm_5 747 788 IPR000225 GO:0005515
Seca8g01386 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 678 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01386 Seca-Chr8 23093789 23099802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01386 180 797 U-box Gene Family AT2G23140 60.031 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01386 - - gmx:100777715 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01386 8 23093789 23099802 Seca6g02541 6 88716229 88724512 PCT