Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01384 ATGTTTGGATGTCCAGAGACAGCCAAAGAAAGATTAGATGAGATAGCAAAGGTTAAATCAGAAGGAGGAGAAGCATCTTCTCAAATGGGAAGGAAGCATTTTTATGGTCCTGCTTCTGGGACAACCTTAAACACAGTAACACCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGTCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTTGCAGCTGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCTAAGATGCTAATGGAGGTACCTGAAGGGCAAAGAGCTGATGCAGCAAATAGTCTTGTTTATGAAGCAAATTTGAGGTTGAGAGATCCTGTATATGGATGCATGGGTGCAATTTCAGCTTTGCAGCAACAAGTTCAAACTTTACAAGCAGAACTACATGCAGTAAGGGCTGAAATACTAAAATACAAATATAGAGAAGCTGCAACAAGTCTTATTTCATCTCATGCTGCTTTAGTATCATCTGGTGAAGCATCAATGCCTACAAACTCATCACAAGGTCTTTCTCAACCTCTTCCTCCTCCATCTCCATCTCCTGCTCCTCCTCCACCACCACCAAAACCTTTACCTTCCCCTTCTATTATCCTTTCATCCTTGTCTTCATCTTCTGCTTCTTCTGTGTACACTCCCCCTAAAAGCACAATGAGCCATGGATCCATTTCCAGTGAAAATGTTCCATACTTTGTTTAG 735 0.4136 MFGCPETAKERLDEIAKVKSEGGEASSQMGRKHFYGPASGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTLQAELHAVRAEILKYKYREAATSLISSHAALVSSGEASMPTNSSQGLSQPLPPPSPSPAPPPPPPKPLPSPSIILSSLSSSSASSVYTPPKSTMSHGSISSENVPYFV. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01384 244 Coils Coil 127 147 - -
Seca8g01384 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 193 - -
Seca8g01384 244 MobiDBLite consensus disorder prediction 183 207 - -
Seca8g01384 244 MobiDBLite consensus disorder prediction 208 238 - -
Seca8g01384 244 Pfam Lateral organ boundaries (LOB) domain 48 145 IPR004883 -
Seca8g01384 244 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Seca8g01384 244 MobiDBLite consensus disorder prediction 172 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01384 Seca-Chr8 23068229 23070530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01384 10 158 AS2 family AT2G30340 71.429 1.27e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g01384 LOB 7.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01384 - - ccaj:109795340 318.161