Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01382 ATGTCCTCGTTATTACTGCCCTGCTTGGTGCTTGATAAAGGAGGACCAAAAATCTCTAGCTCATTCATTCACTATTCCTTGATGCACAATTGGCACACAAGTTTATTTTTTGTGCCTGTTGTGTTAATATATGATATGGATAATACATCAAAAGTCTTGATGCAAAAATATGAATTAGGAAGGTTACTAGGCCAAGGCACATTTGGAAAGGTTTACTATGGAAGGAGCACAATAACTAACCAGAGTGTGGCTGTTAAAGTGATTGACAAGGATAAGGTTATTAGAACTGGGCAAGCTGAGAACATTAAAAGGGAAATATCTGTTATGAGACTGGTTAGGCATCCAAATATCATAGAGCTTTTTGAGGTCTTAGCCACAAAGGGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTTTTCAAGAAGGTGGCTAAAGGAAAGCTCAAAGAAGATGTTGCACATAAATATTTTAAGCAGCTAGTGAGTGCAGTGGATTTTTGTCACAGTAGAGGTGTATACCATAGAGATATAAAGCCAGAGAACATTTTGTTGGATGAGAATGAGAACCTGAAGGTCTCTGATTTTGGGCTAAGTGCCCTGGCTGAATCCAAAAGGCAAGATGGTTTGCTTCATACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGTTATGATGGTGCCAAAGCTGATATTTGGTCTTGTGGAGTGGTTCTGTTTGTGTTATTGGCAGGTTATGTTCCTTTCAATGACTCAAATTTGATGGAGATGTATAGGAAGATAAGCAAAGCAGAGTTTACATGTCCTAAATGGTTCCCAAGAGAAGTCAGGAGGCTATTGTACAAGATGTTGGATCCAAATCCTGACACTAGGATTTCTATAGCTGAGATTAAGCAATGTTCTTGGTTTAAGAAAGGGCCAAATGGTAGACAGAAAAAAAAAGAAGGGGAAAATAGGAACGTCTCTCCTGTGACCATAAATCATTCTGATCAAGGTGATGAAAGTGATGAACTAGCAGCAGAAGCAAGGCAAGAGCCAGTGGTGCCTATAAGTATAAATGCCTTTGATATCATCTCACTTTCCTCTGGTTTTAATCTCTGTGGATTCTTTGAAGATAGTTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCTGCATCAGTCATTATCTCCAGGCTGGAAGAGATTGCTAAGAGACTGAAGCTTAAAATACAGAAAAGAGCTGCTGGTTTGTTGAAATTGGAGAGCCTTGGTGAAGGTAGGAAGGGGATTTTATCCATTGATGCAGAGATCTTTGAGGTTACTCCATTTTTCCATTTGGTGGAAGTGAAAAAATCAAATGGGGATACATTGGAATATCAGAAAATAATGAATGAAGATATAAGGCCTGCTCTTCAAGATATTGTTTGGGTTTGGCAAGGTGATCAACAAGAGCAATTGCAACAGTCAGAGCAACAGCAGCAGCAGCAACAATCACAGTGA 1509 0.393 MSSLLLPCLVLDKGGPKISSSFIHYSLMHNWHTSLFFVPVVLIYDMDNTSKVLMQKYELGRLLGQGTFGKVYYGRSTITNQSVAVKVIDKDKVIRTGQAENIKREISVMRLVRHPNIIELFEVLATKGKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFKQLVSAVDFCHSRGVYHRDIKPENILLDENENLKVSDFGLSALAESKRQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYVPFNDSNLMEMYRKISKAEFTCPKWFPREVRRLLYKMLDPNPDTRISIAEIKQCSWFKKGPNGRQKKKEGENRNVSPVTINHSDQGDESDELAAEARQEPVVPISINAFDIISLSSGFNLCGFFEDSFQKREARFTSRQPASVIISRLEEIAKRLKLKIQKRAAGLLKLESLGEGRKGILSIDAEIFEVTPFFHLVEVKKSNGDTLEYQKIMNEDIRPALQDIVWVWQGDQQEQLQQSEQQQQQQQSQ. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01382 502 Gene3D Transferase(Phosphotransferase) domain 1 47 359 - -
Seca8g01382 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Seca8g01382 502 SMART serkin_6 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01382 502 FunFam Non-specific serine/threonine protein kinase 355 479 - -
Seca8g01382 502 FunFam Non-specific serine/threonine protein kinase 48 136 - -
Seca8g01382 502 Gene3D Kinase associated domain 1, KA1 360 480 - -
Seca8g01382 502 SUPERFAMILY Protein kinase-like (PK-like) 53 312 IPR011009 -
Seca8g01382 502 CDD CIPK_C 361 475 - -
Seca8g01382 502 Pfam NAF domain 357 415 IPR004041 GO:0007165
Seca8g01382 502 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Seca8g01382 502 ProSiteProfiles NAF domain profile. 355 379 IPR018451 GO:0007165
Seca8g01382 502 FunFam Non-specific serine/threonine protein kinase 47 335 - -
Seca8g01382 502 MobiDBLite consensus disorder prediction 313 343 - -
Seca8g01382 502 ProSiteProfiles Protein kinase domain profile. 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01382 502 Pfam Protein kinase domain 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01382 502 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 49 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01382 Seca-Chr8 23000001 23001630 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01382 46 495 CBL-interacting serine-threonine protein kinases AT5G58380 67.811 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g01382 Pkinase 1.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01382 - K07198 gmx:100779316 762.681