Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01380 ATGCCGGAGATCGAACAGGCGGCGGCGGAGCCCACCGCGCTGTTCGGCAAATATGAATTGGGGAGGCTCCTAGGCTGCGGCGCGTTCGCGAAGGTGTACCACGCGCGGAATGTAGATACAGGACAGAGCGTGGCGGTGAAGGTGATAAGCAAGAAGAAGGTCATGGGAACAGGACTCGTCGGAAACGTGAAGCGCGAGATCTCCATCATGAGCCGTCTCCACCACCCAAACATCGTGAGACTCCACGAGGTTCTAGCCACCAAGACCAAAATCTACTTCGTCATGGAGTTCGCAAAAGGAGGAGAACTCTTCGCGAGAATCTCCAAAGGTCGCTTCAGCGAAGATCTCGCCCGTCGCTACTTCCAACAGTTAATCTCCGCCGTCGGTTACTGCCATTACCGCGGTGTCTTCCACCGTGACTTGAAGCCTGAAAACCTCTTGCTCGATGACAAGGGTAATCTGAAGGTCACCGATTTTGGACTCAGTGCGTTGAGGGAGCAGGTTCGGGTGGATGGTTTGTTACACACGCTTTGTGGCACGCCTGCTTACGTGGCACCGGAGATTCTGGTGAGGAAGGGTTATGATGGTGCTAAAGTTGATGTTTGGTCTTGTGGAGTTATTTTATTTGTTCTTGTTGCTGGTTATCTTCCGTTTAATGATCCGAATTTGATGGCGATGTATAAGAAAATTTATAGCGGCGAGTTCCGGTGCCCGCGGTGGGTTTCGCCGGATTTGCGGCGGTTTTTGTCGAGGTTAATGGATACGAACCCGGAGACGAGGATCACCGTTGATGAGATTACCAAGGATCCATGGTTTCGGAAGGGGTATAAGGAGGTGAAGTTTCACGAGGAGGATTTGGGATCGAAGGTGGATAGTAGTGATGATGAAAAGGTGATGGATTTGAACGCGTTTGATATAATCTCGTTTTTCTCTTCGGGTTTGAACCTTTCGCAGTTGTTTAACAAGGTGGAGGAGGAAGGGGAGCGGTTTATGTTGCGGGAGTCGCCGGAGAGGGTTGTGGAGAAGGCGGAAGCGGCGGCGAAGGCGGAGGGGTTTGCAGTGAGGAGGAAGAATGATTTTGGGGTTGAGGTGGAGGGGCAAAATGGGAATTTGGTTATTGCGTTGGTGGTTTACCGGTTAACGGAGGAGCTGGTTGTGGTGGAAGTGAAGTGGAAGGGAGGGGATGCTGTTGCTTTTGAGGATGTGTGGAGGAACAAGCTGAGGCCTTATCTTTGTGCTGCAACGACGTCGCATCAGCACCAAACTCAGTCTCACGCGGTGTCTTCTGCTGACTGA 1296 0.5201 MPEIEQAAAEPTALFGKYELGRLLGCGAFAKVYHARNVDTGQSVAVKVISKKKVMGTGLVGNVKREISIMSRLHHPNIVRLHEVLATKTKIYFVMEFAKGGELFARISKGRFSEDLARRYFQQLISAVGYCHYRGVFHRDLKPENLLLDDKGNLKVTDFGLSALREQVRVDGLLHTLCGTPAYVAPEILVRKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMAMYKKIYSGEFRCPRWVSPDLRRFLSRLMDTNPETRITVDEITKDPWFRKGYKEVKFHEEDLGSKVDSSDDEKVMDLNAFDIISFFSSGLNLSQLFNKVEEEGERFMLRESPERVVEKAEAAAKAEGFAVRRKNDFGVEVEGQNGNLVIALVVYRLTEELVVVEVKWKGGDAVAFEDVWRNKLRPYLCAATTSHQHQTQSHAVSSAD. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01380 431 Gene3D Transferase(Phosphotransferase) domain 1 98 300 - -
Seca8g01380 431 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Seca8g01380 431 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01380 431 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Seca8g01380 431 Gene3D Phosphorylase Kinase; domain 1 8 97 - -
Seca8g01380 431 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01380 431 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01380 431 FunFam Non-specific serine/threonine protein kinase 8 301 - -
Seca8g01380 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Seca8g01380 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 392 - -
Seca8g01380 431 Pfam NAF domain 301 355 IPR004041 GO:0007165
Seca8g01380 431 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Seca8g01380 431 CDD CIPK_C 302 412 - -
Seca8g01380 431 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Seca8g01380 431 Gene3D Kinase associated domain 1, KA1 301 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01380 Seca-Chr8 22981635 22983628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01380 1 417 CBL-interacting serine-threonine protein kinases AT2G30360 63.573 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g01380 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01380 - - gmx:100815088 610.527