Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01370 ATGTATTCCAAGAGAGAGAACAAGGAGGTTGGAAAGGCAGAGCAACGTTATGTGGAAACAGATCCAACTGGTCGCTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGTGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTGCTTGGAATAGAGGTAGCATGGAACCAAGTCAGACTAAATGAGGTTCTTAACACCCCAGATGATTTGCAACGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCACCAGTCCATCATACGATTTTATACCTCTTGGATTGATGTTGATAACAAGGCCTTCAACTTTGTTACAGAAATGTTCACATCAGGATCATTGAGAGAATACCGGAAGAGATATAAGCGAGTCAGCATACAAGCAATAAAGAGTTGGGCTCGCCAAATCTTACAGGGTCTTGTTTATCTACATGGCCATGATCCACCTGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTAGGACAAGTGAAAATTGGTGATCTGGGACTAGCTGCAATTCTTCATGGTTCCCATTCAGCTCACAGTGTTATAGGCACCCCTGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGCTGATGTGTACTCATTTGGCATGTGTGTATTGGAAATGCTTACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAGATCTACAAGAAAGTGACATCGGGAAAGCTACCAATGGCGTTTTTCCGCATTGAAGACATGGAAGCACAGAAGTTTATTGGAAAATGCCTAGTACCTGCAGAAAAGAGACCATCAGCAAAAAATTTGTTGCTTGACCCTTTTCTTGTGTCTGATGATTCATCTTCTACAACTAAGTTTATTCAGAAGCCATTCTTGAATGATAGTGAGATGGAAAAATTGCATTTGAGTGATGATCTTCCTAGGACTGAAATGAAAGTAATAGGAAAGCTGAATCCTGAGGATGATACTATCTTTCTCAAAGTGCAAATTTCTGATAAGAATGGTTCTGTTAGGAATGTATTTTTTCCCTTTGACATTCTCACTGACACCCCCATTGATGTTGCAACGGAGATGGTAAAAGAGTTGGAGATTGTTGATTGGGATCCTTTTGAAATTGCAAATATGATTGATAGAGAGATATCTGCTCTGCTACCACATAGAAGGAAAAATAACTATTCAGATGCTTTCCACACATTCAGTTATCAAGATGATGATGATGAACCTCATCATCATTTCCACTCATTCTCTTCTTGTTCATCATTACAAGAACCAATACCAGATTTAATCAGTAAATCTGAGGAAATATCAGGTGGATATTATTGGCTCCATGATGATTTGCGTGATGATACCAGCTCAAGATGCTCATCACAAGGGACATATTCCAACTTGAATTACTATTCTGTAGATGACCAAGAATACAATGTGGCTTCTATCAAAAAAGATAAGCTTTCCATCATAAAGAGTCACAAAGGCACAAGGTTTTGCCCTTCTGAAGACTTAAACAATTGCAACCATTGTAAAATTTTAGTAGGATCACAGACTCCTTCTACTAGTAAAAATAAAATGATGATAGACAATCATAGATTGACAAGGAACAGGTCATTAATTGATATAAGGAGCCAATTATTACACCGATCACTGGTTGAAGAGATACACAAAAGAAGGCTATTCAAGACAGTTGGTGCTGTGGAAAATATTGGATTTCAGTCACCATATGATGCTTCCAAAAAATAG 1764 0.3866 MYSKRENKEVGKAEQRYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEVLNTPDDLQRLYSEVHLLSTLKHQSIIRFYTSWIDVDNKAFNFVTEMFTSGSLREYRKRYKRVSIQAIKSWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSHSAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQKFIGKCLVPAEKRPSAKNLLLDPFLVSDDSSSTTKFIQKPFLNDSEMEKLHLSDDLPRTEMKVIGKLNPEDDTIFLKVQISDKNGSVRNVFFPFDILTDTPIDVATEMVKELEIVDWDPFEIANMIDREISALLPHRRKNNYSDAFHTFSYQDDDDEPHHHFHSFSSCSSLQEPIPDLISKSEEISGGYYWLHDDLRDDTSSRCSSQGTYSNLNYYSVDDQEYNVASIKKDKLSIIKSHKGTRFCPSEDLNNCNHCKILVGSQTPSTSKNKMMIDNHRLTRNRSLIDIRSQLLHRSLVEEIHKRRLFKTVGAVENIGFQSPYDASKK. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01370 587 Gene3D - 326 401 - -
Seca8g01370 587 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Seca8g01370 587 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01370 587 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01370 587 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Seca8g01370 587 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Seca8g01370 587 CDD STKc_WNK 25 285 - -
Seca8g01370 587 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 441 - -
Seca8g01370 587 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01370 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Seca8g01370 587 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Seca8g01370 587 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01370 Seca-Chr8 22847923 22853181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01370 17 587 MAP Kinase Kinase Kinase AT5G58350 61.552 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca8g01370 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01370 K08867 - gmx:100272203 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01370 8 22847923 22853181 Seca8g01370 8 22847923 22853181 ECH