Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01366 ATGGCAACATCTTCTACTTCACTAGTTATTCTCATTTTTCTCTTCATTGACATGCACTTGCATGGTGTCATTGCTGATTATGGCGGTTGGCAGAATGGTCATGCCACTTTCTATGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCATGTGGTTATGGGAATTTGTATAGTCAAGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGTTTGAGTTGTGGGGCTTGTTTTGAAATGAGGTGTGCTGATGATCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCCACAAACTTTTGTCCACCAAATTTTGCTTTGCCTAACAATAATGGTGGTTGGTGCAACCCTCCTCTCCAACACTTTGATATGGCAGAACCAGCCTTCCTGCAAATTGCGCAATATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGGTTAGTGAAATTTGAAACCATTAATATGGGAGGAATAAGGTTCACTATCAATGGCCACTCTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCAATGCAGTGTCAATCAAAGGGTCAAAAACTGGCTGGCAACGAATGTCAAGAAACTGGGGGCAAAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACCACCAGTGACGGTAGAACCGTGACAAGCTATAACGTGGCACCAGCTAATTGGCAGTTTGGTCAAACCTTCCAAGGGCATCAGTTTTAA 768 0.4466 MATSSTSLVILIFLFIDMHLHGVIADYGGWQNGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCADDPRWCKPGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRLVKFETINMGGIRFTINGHSYFNLVLITNVAGAGDVNAVSIKGSKTGWQRMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNVAPANWQFGQTFQGHQF. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01366 255 SMART dpbb_1 65 150 IPR007112 -
Seca8g01366 255 PANTHER EXPANSIN-A15 6 255 IPR002963 GO:0009664
Seca8g01366 255 SUPERFAMILY PHL pollen allergen 162 252 IPR036749 -
Seca8g01366 255 Pfam Lytic transglycolase 65 149 IPR009009 -
Seca8g01366 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 153 IPR007112 -
Seca8g01366 255 CDD DPBB_EXPA_N 29 152 - -
Seca8g01366 255 Gene3D - 18 154 IPR036908 -
Seca8g01366 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Seca8g01366 255 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Seca8g01366 255 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Seca8g01366 255 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Seca8g01366 255 Gene3D - 163 255 IPR036749 -
Seca8g01366 255 FunFam Expansin 18 155 - -
Seca8g01366 255 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Seca8g01366 255 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Seca8g01366 255 FunFam Expansin 163 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01366 Seca-Chr8 22711249 22713000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01366 1 255 Expansin Gene Family AT2G40610 76.172 2.08e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01366 - - gmx:100816848 468.003