Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01355 ATGTTGACTTCTGCTTCTCTCTCATGTTCCCCTTCCTTTACTCCTCTTGCTCTATCTTCTTCACCTCCTCAACGTTATGTCAAGGAGGGATTGATTTCTATTGGAATCTATTCAATGGAAGGTGATGTTTGCATGAATCGTGCGTGCAAGGATGGCTCTAACCGTCAATGGAAGAAGGGATGGCCCCTGTTATCTGGGGGATTCGCCAGACTCTGCAACAAATGCGGAACTGCTTATGAGAAATCACTTTTCTGTCATAAATTTCACGCTCATGAAAGTGGTTGGAGGAAATGCAACTATTGCAGCAAGCTTATCCACTGTGGATGTGTAGTATCAAGGTCTTCGTTTGAATACCATGATCTTGGTGGTGTAGGTTGTGTTACCTGTATAAAGGCTTCCCAAAGTTTTCTGATGCATAATAATGAAGCTCCTAATGAGTCTGTTAGATCAACAAAAAACAATGCAAGTGATCGGGATGCTGAGCATATTGATAGTGCTGGTGAAGGAAAACTTATGCAATTGTGTAAAATTGCTGAAGCTAGTGAATCCAAGAGTTGGCCTCAAGCTCAAAGAGATGCCACAGTTTCATGTATTGGTCCAAACAACCAAAAAGCTAAGAGTCTATTCAGGGAAGAGGATACAAGGCTTTCAAATGTGATGAAGCAGTCTAGTCATTCATTTACATTTACTTCAGCAGAAAATAATAGACCAACATGGGAGACTAAAAGTATGCAACAATTGCTTTCACTTAGTGATTCTCTGAGAACCTCATCAGGAAATTGTGCCCTGCCTTCTGCCACAGAAATTGTAGAAGGTAGACTTGAGGTTAAAGAATCTTCTCCCTTTCCTCAAGGGAAAAGTTCTTACCACCCTATATTGCCTAAACCGTTGAAGTCTGGTCATATCATAAATCTTGAAACAAATAAAGACATGAGTTCTCAAGCACGCATTGCCCGGCCACCTGCTGAGGGGAAAGGCAAGAATCAGTTACTTTCTCGATACTGGCCCAGGATTACTGATCAAGAACTGGAGCAATTGTCTGGGGATTTGAATTCTACTGTAGTGCCATTGTTTGAGAAGGTGTTGAGTATCAGTGATGCAAGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCATGCGCTGAGGCTTATTTTCCTCCTATTTCGCAATCAGAAGGTATTCCTCTGCATATCCAAGATGTCAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTAACCCCTTGCATACAGTCCATGCAATTAAATGCTGGTGATACTGTGACATTTAGTCGGATAGATCCTGGGGGAAAATATGTTATGGGTGTTAGAAGAAGGACATCAAATTTTGTATACGCACAGGTTGCCTCTGCATCTGCTCATTCTAATGACATTTCAACAAAGGAAACAACCTTTTCTGGTGCAGCTGAGAATCTGTACTCTGAAAGTAGTTTTCTTGATCTTCTCCAGTCAAGGAAAGGGAATGAGGAACCTTACTTAGATGGAAATTCAGAACATCTACATTTGGGCACTCAAACTGCTGATTGGCTTCAAAATGAAAATGGTGAGGAGAAGATGAACAATGATACATTGCAGCAACTGATTTCAGTTTCAGAGAAGAAAAGGACTCACAAAATTGGTCCTAAAACTAAGAGGTTGGACATTGATGATGAAGATTCTACGAATTTGAGACTTGCATGGGATAAAATGGACTTGCTTTGTCCCCCTCCTGGTGTCAAGCCAAGCATTGAAATAATTGATGGCGTAGAAATTGAAGAATATAATGAACCCCCAGTTTTCAGAGAGGGAACCACAGTCAACCTTTCCCCATCTGAGTCTTCAATTCCTGCATCAGAGCAGTCAAGTACAAAGGAATTAGAAAATCTTGAGAGAGCCAACAAAGATTCTAAAAAGGAAAAATGTAAGTCAAACCAACAACACAAGCCTTCTGGCTTAGATGCTCTTGCTAATGCAGTAATTTTGGAAGATAACCTTGATGATCCTGTTGGAGTTACCACCAAACATCCAAGGCACCGTCCTGGATGCACTTGTATTGTGTGCGTTCAACCTCCAAGTGGAAAAGCTAGACATAAGCCTACATGCACTTGCCTTGCATGCTTGTCTATGAAGCGTCGGTTCAACACCCTTAGGTTGCGTAAGAAGAACCACCAATCAAAACATGAAGTAGATGCTGCCCATATTCATCACAGGGATGAACCAGATAGCAAGGATGCATCTGGAGAAGATACAAGTCAATTAGAGAAAGAGGGAAGGCTAGAAAGAGGTCAGGTTGAGGTGGCTGAACCCAGTGCCAGACAAATAGATCTGAATTGTCATCCCAGTCATGAAGATATGCAAGTTGATTAA 2403 0.4157 MLTSASLSCSPSFTPLALSSSPPQRYVKEGLISIGIYSMEGDVCMNRACKDGSNRQWKKGWPLLSGGFARLCNKCGTAYEKSLFCHKFHAHESGWRKCNYCSKLIHCGCVVSRSSFEYHDLGGVGCVTCIKASQSFLMHNNEAPNESVRSTKNNASDRDAEHIDSAGEGKLMQLCKIAEASESKSWPQAQRDATVSCIGPNNQKAKSLFREEDTRLSNVMKQSSHSFTFTSAENNRPTWETKSMQQLLSLSDSLRTSSGNCALPSATEIVEGRLEVKESSPFPQGKSSYHPILPKPLKSGHIINLETNKDMSSQARIARPPAEGKGKNQLLSRYWPRITDQELEQLSGDLNSTVVPLFEKVLSISDASRIGRLVLPKACAEAYFPPISQSEGIPLHIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLNAGDTVTFSRIDPGGKYVMGVRRRTSNFVYAQVASASAHSNDISTKETTFSGAAENLYSESSFLDLLQSRKGNEEPYLDGNSEHLHLGTQTADWLQNENGEEKMNNDTLQQLISVSEKKRTHKIGPKTKRLDIDDEDSTNLRLAWDKMDLLCPPPGVKPSIEIIDGVEIEEYNEPPVFREGTTVNLSPSESSIPASEQSSTKELENLERANKDSKKEKCKSNQQHKPSGLDALANAVILEDNLDDPVGVTTKHPRHRPGCTCIVCVQPPSGKARHKPTCTCLACLSMKRRFNTLRLRKKNHQSKHEVDAAHIHHRDEPDSKDASGEDTSQLEKEGRLERGQVEVAEPSARQIDLNCHPSHEDMQVD. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01355 800 MobiDBLite consensus disorder prediction 735 777 - -
Seca8g01355 800 Pfam B3 DNA binding domain 358 458 IPR003340 GO:0003677
Seca8g01355 800 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 42 798 - -
Seca8g01355 800 Gene3D - 336 461 IPR015300 -
Seca8g01355 800 MobiDBLite consensus disorder prediction 636 658 - -
Seca8g01355 800 MobiDBLite consensus disorder prediction 613 663 - -
Seca8g01355 800 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g01355 800 MobiDBLite consensus disorder prediction 614 635 - -
Seca8g01355 800 FunFam B3 domain-containing transcription repressor VAL1 336 462 - -
Seca8g01355 800 ProSiteProfiles B3 DNA-binding domain profile. 358 459 IPR003340 GO:0003677
Seca8g01355 800 CDD B3_DNA 356 457 IPR003340 GO:0003677
Seca8g01355 800 Coils Coil 631 651 - -
Seca8g01355 800 MobiDBLite consensus disorder prediction 732 800 - -
Seca8g01355 800 SUPERFAMILY DNA-binding pseudobarrel domain 355 460 IPR015300 -
Seca8g01355 800 SMART B3_2 358 459 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01355 Seca-Chr8 22390791 22397675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01355 39 799 B3 DNA Binding Superfamily AT2G30470 41.995 4.32e-177 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g01355 B3 8.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01355 K09287 - gmx:100789848 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01355 8 22390791 22397675 Seca8g01355 8 22390791 22397675 ECH