Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01354 ATGGACGGTGAAGTTTGCATGAATCATGCGTGCAAGGATGGCTCTGCCCATCAGTGGAAGAAGGGATGGCCCCTGTTATCTGGGGGATTCGCCAGACTTTGCAACAAATGCGGAACTGCCTATGAGAATTCAGTTTTCTGTCAAAAATTCCACCGTTATGAAAGTGGGTGGAGAGAATGCAACTATTGCGGCAAGCTTATCCATTGTGGATGTGTAGTATCAAGGTCTTCGTTTGATTACCTTGATCTTGGTGGTGTAGGTTGTGTTACCTGTTTAAAGGCTTCCCAACATTTTCTGGTAAGGTTACTCTATTATAATTGGTCCCATCATTTGCTAATTTCTGGATATATATATGTTGATTTCTCTGCCATTGTGACACAGAAAATTCACATATTCGTATTGTTAAATGATTTTCTTCAGATGGATAATAATGAAAATCCTAATGAGTTAGTTAGATCAACAAATAACAATGCAAGTGATCGGGATGCTGAGCATATTGATAGTGCTAGTGAAGGAAAACTTATGCAATTGTGTAAAGTTGCCGAAGCTAGTGAATCCAAGGATTGGCCTCAAGCTCAAAGAGATGCCATAGTTTCATGTATTGATCCGAACAGTCAAGAAGCCAAATGTCTATTTACGGAAAAGGATGCAAGGTTTTCAAATGTGATGAAGCAGTCTAGTAAACCAACATGGGAAACAAAAAGTATGCGTGATCAATTGCTTTCACTTAGTGCTTCTCTGGGAACCTCATCAGGAAATTTTCTCCTACCTTCTGCTACAGAAATTGTAGAAGGTAGACTTGAGGTTAAAGAATCTTCTCCCCTCCCTCAGGGGAAAAGTTCTTACCACCCTATATTGCCTAAACAGTTGAAGTCTGGGCTTATCATGAATCTTGAAACAAATAAAGACAGTGTTTCTCAAAATTGCATTGTCCAACCACCTATTGAGGAAAGAGGCAAGAATCAATTACTTTCTCGATACTGGCCCAAGATTACTGATGAAGAGCTAAAGCAATTGTCTATGGATTTAAAATCTAATGTAGTGCCATTGTTTGAGAAGGCTTTTTTTCCTCCTATTTCGCAACCAGAAGGTATTCCTCTGCATATACAAGATGTCAAGGGGAATGAGTGGACATTTCAATTTAGATTTTGGGCTAATAACAACAGTAGGATGTATGTTTTGGAGGGTCTAACCCCTTGGATACAATCCATGCAATTAAAGGCTGGTGATACTGTGACATTTAGTCGAAAAGATCCTGGGGGAGAATATGTTATAGGTGTTAGAAGAAAGCCATCAAATTTTGTATACACACAGGTTGCCTCTGCATCTACTCATTCTAATGATATTTCAACAAAGGAAACAACCTTTTCTGGTATTGTTGAGAATCTACACTCTGAAAATAGTTTTCCTAATATTTTCTTGTCAAGGAAACTGAATGGGGAACCTTACTTAAATGGAAATTTAGAACATCTACATTTGGGCACTCCAACTGCTAATTCACTTCATGCTGAAAATTGTGAGGAGATGATGAACAATGATACATCGCAACAACTGATTTCAGTTTCAGAGAAGCTAAGTACTTGCAATATTGGGCCTAAAATTAATAGGATGCACATTTATGGTGAAGATTCTATGAAGTTGAAATTTGAATCGGTTGTAAAGGACATGCTTTGTCCTCCACCTGGTGTCCAGCCAAGCATTGATATAATTGATGGCATAGAAATTGAAGCATATAATGTAAGTATGACACTATCGAAGCAGTCCATATTTTCTTTTTAA 1779 0.3811 MDGEVCMNHACKDGSAHQWKKGWPLLSGGFARLCNKCGTAYENSVFCQKFHRYESGWRECNYCGKLIHCGCVVSRSSFDYLDLGGVGCVTCLKASQHFLVRLLYYNWSHHLLISGYIYVDFSAIVTQKIHIFVLLNDFLQMDNNENPNELVRSTNNNASDRDAEHIDSASEGKLMQLCKVAEASESKDWPQAQRDAIVSCIDPNSQEAKCLFTEKDARFSNVMKQSSKPTWETKSMRDQLLSLSASLGTSSGNFLLPSATEIVEGRLEVKESSPLPQGKSSYHPILPKQLKSGLIMNLETNKDSVSQNCIVQPPIEERGKNQLLSRYWPKITDEELKQLSMDLKSNVVPLFEKAFFPPISQPEGIPLHIQDVKGNEWTFQFRFWANNNSRMYVLEGLTPWIQSMQLKAGDTVTFSRKDPGGEYVIGVRRKPSNFVYTQVASASTHSNDISTKETTFSGIVENLHSENSFPNIFLSRKLNGEPYLNGNLEHLHLGTPTANSLHAENCEEMMNNDTSQQLISVSEKLSTCNIGPKINRMHIYGEDSMKLKFESVVKDMLCPPPGVQPSIDIIDGIEIEAYNVSMTLSKQSIFSF. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01354 592 Pfam B3 DNA binding domain 359 430 IPR003340 GO:0003677
Seca8g01354 592 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 591 - -
Seca8g01354 592 SMART B3_2 351 431 IPR003340 GO:0003677
Seca8g01354 592 CDD B3_DNA 347 429 IPR003340 GO:0003677
Seca8g01354 592 ProSiteProfiles B3 DNA-binding domain profile. 367 431 IPR003340 GO:0003677
Seca8g01354 592 Gene3D - 329 433 IPR015300 -
Seca8g01354 592 SUPERFAMILY DNA-binding pseudobarrel domain 351 429 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01354 Seca-Chr8 22310529 22318115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01354 1 91 B3 DNA Binding Superfamily AT2G30470 53.846 1.48e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g01354 B3 9.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01354 K09287 - gmx:100799429 557.37