Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01338 ATGTCCGTACAGTCAACCCTTAAACTGCAAAAGCTGAAGCTGGCTACCCCAAGTTCAGTTTTTGAAGGTGACCCACCATGCAAAACCAAGAGGAATACCCAAAGGAAGCTTGTTCGGATCATACTCACCGACCATGATGCCACTGATTCTGACTCCTCAAGTGATGAAGAGAGAGAAAACAAACCAAAAAGAACACGAAAAACAAAGAGGGAAATCACACTGATAAACATGAACTTTCACTCCTCAGATTCCCCTTCTTCATCTTCCTATTCTTCTCCATCTTCTTCTCTCATTTGCTCCTTCTCTTCTTCCTCGGAGCGTGAGAGTCTCACCAAGTGCAACAAGAGACCCAAAAAACAGCCACCGTCCACCGCCACGCGCCGCCACAACAAGTTCCGCGGCGTCCGGCAGCGACCTTGGGGCCGGTGGGCCGCCGAGATCCGCGACCCCACCCGCCGGAAAAGGCTCTGGCTGGGAACCTTCGACACGGCGGAGGAGGCCGCCACCGAGTACGACAAGGCGGCGCTGAAGCTCAAGGGTCCAAACGCCGTCACCAACTTCCCCAAGACGCCGGTGGAGGAGGAAACGGTTGTGCCTCCTTCCGTCTCCGTTGACGGCGGCGCGTCGTGCTCTGACGCTTTGGCCTCGCCGACGTCTGTTTTGGCCTACGTGGACGGTGACACGACGCCGTTTGACGGTTTCCGTTACGGCGACGTGGACGCGTTTGGGTTCCACATCGACGGGCCGTTAAGTTTGCCGGACATGGACGTTATGCTGACGTGTCAACAAAAGAAGGAAGATGAGGCGTTCGATGAATTCGACCTCGACGAGTTCATAACGTGGCCTTACTAA 852 0.5481 MSVQSTLKLQKLKLATPSSVFEGDPPCKTKRNTQRKLVRIILTDHDATDSDSSSDEERENKPKRTRKTKREITLINMNFHSSDSPSSSSYSSPSSSLICSFSSSSERESLTKCNKRPKKQPPSTATRRHNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAALKLKGPNAVTNFPKTPVEEETVVPPSVSVDGGASCSDALASPTSVLAYVDGDTTPFDGFRYGDVDAFGFHIDGPLSLPDMDVMLTCQQKKEDEAFDEFDLDEFITWPY. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01338 283 PIRSF PTI6 7 283 IPR017392 GO:0003700
Seca8g01338 283 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Seca8g01338 283 MobiDBLite consensus disorder prediction 41 92 - -
Seca8g01338 283 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 221 - -
Seca8g01338 283 MobiDBLite consensus disorder prediction 109 132 - -
Seca8g01338 283 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 CDD AP2 131 188 IPR001471 GO:0003700|GO:0006355
Seca8g01338 283 SUPERFAMILY DNA-binding domain 131 188 IPR016177 GO:0003677
Seca8g01338 283 MobiDBLite consensus disorder prediction 74 92 - -
Seca8g01338 283 MobiDBLite consensus disorder prediction 41 73 - -
Seca8g01338 283 FunFam Ethylene-responsive transcription factor 2 130 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01338 Seca-Chr8 21703078 21703929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01338 28 223 AP2-EREBP Transcription Factor Family AT4G27950 46.798 3.64e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g01338 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01338 K13434 - gmx:100800489 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01338 8 21703078 21703929 Seca8g01338 8 21703078 21703929 ECH