Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01316 ATGGGGTTGCTTTTGAAAACGGGGAAGAAAAACACCCTGTTTAGTTCTGAAGAGATATTTAAGAGGTCTGGTGATTTGTATGTTCCTGGGATGTATCTTTCAAAGGGTTGTAAGTGTGAAGTTGTTCTCTGCTTTTTGTTCTGCTGCTATTTCCTATTGGCTGCTGGACAGAGTACTGACCCCAACGAAGTTGACGCATTGAGAGCCATAAGAGAGAAATTGATTGATGTTAATGGAAATTTGAGCAGCTGGAGTCGTGGAGACCCATGTACATCCCAGTGGACAGGAGTTTTGTGCTCCAATAGAACATCGGATGATGGCCATCTACATGTTCTACAATTGCAACTACTGAATATGAACTTGTCTGGAACTTTGGCACCTGACATTGGCCGCTTATCTTGTCTGCAAATATTGAGCTTTATGTGGAACAACATAAGTGGGAGTATACCGAGTGAAATTGGCAACATCAAAACTTTAAAACTCTTGCTCCTGAATGGGAATAATTTAAATGGCACGTTACCAGAAGAGCTTGGCTATCTTCCAGTCCTCAACAGAATACAAATCGATTACAACAATATTACAGGACCTATTCCTCCATCATTTGCAAATTTAAACAGCACAAAACACTTTCACATGAACAACAATTCACTTACTGGCCAAATCCCACCAGAGCTTTATCGCTTAGGAAGCCTTTTTCACCTTCTGCTTGACAACAATAAATTAACAGGATATCTCCCCTCCAACCTCTCTGAGATGCCAAACTTAAAGATACTTCAACTTGATAACAATAACTTTGGTGGAAATAGCATTCCAGATTCTTATGCCAACATGTCAAAATTATTGAAATTGAGCCTTAGGAACTGCAACTTGACAGGACAAATTCCTGATTTAAGCAGGATACCACACCTTAGTTATCTTGACCTCAGTTTCAATCAGTTGAATGGATCAATTCCTGCTAATAAGCTTTCTGAAAATATCACAACTGTTGATTTATCAAACAACAAGCTGACTGGAACTATTCCATCCTACTTTTCTGGTCTTCCTCGTCTTCAGAAATTGTCAATTGCAAACAATTTATTGAGTGGCAATGTTTCCTCTACCATTTGGCAAGACAGGACTTTAAATGCAACAGAAATGCTTCTCTTGGACATGCAAAACAATCAACTTACAAGCATATCAGGAAGTACAAATCTTCCTCCAAATGTCACACTCTTGCTTAGAGGAAATCCTTTATGCACAAATAACAACACTCTAGCTCAGTTCTGTGGAGCTGGAAGTGACAATAACATCAATGGCAACTTCAATGGTACCTGTCCTAGTCAACCATGTCCCCCTCCTTATGAATACAATGCGCAATGTGTCTGTGTAGCCCCTTTGCTTGTTCATTACCGGTTGAAAAGTCCAGGATTTTCAGATTTCCGTACATATGTGGAACCATTTGAAAGCTTCCTAACAGATGGTCTTAATATACATAATAATCAGCTACAGATTAATAGTTTTACATGGGAAGAAGGGCCTCGGTTGAAAATGGACTTGAAGCTTTTTCCTGTATATGTTGATAACGGAAGCTCTCATCTTTTCAATACAAGTGAAGTTCATCGGATCAGAAACATGTTCAGAGAATGGGATATGCACGATAATGACTTGTTTGGACCTTATGAACTTCTAGATTTCATTCTCCTAGATCCTTACAATGATGTGATTGATACATCTTCAAGTTCAGGGATAAGCAAAGGTGCACTAGCTGGAATAGTCTTAGGTGCAATTGCTGGTTCAGTTACATTATCTGCAATTGTTACCATTCTTATATTAAGATTACGCTTCAAAGATTATCGTACACTTTCCAAACGGCTTAAAGCATCTAGGATCTCAATAAAAATTGATGGTGTAAGATCATTTGATTATGAAGAAATGGCCTTGGTTACGAACAATTTTAGTGAATCTGCTCAAATTGGACAAGGGGGATATGGAAAGGTTTATAAAGGTACTCTTTCTGATGGAACTGTTGTTGCCATAAAACGTGCACAAGAAGGTTCACTGCAAGGTGAGAGGGAGTTTCTTACAGAAATACAATTGCTATCAAGATTACATCATCGCAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAACAGAACACTAAGGGATCACCTTTCTGCTTCTTCAAAGGAACCTCTTAGCTTTTCCATGAGATTGAAGATTGCTCTAGGGTCAGCTAAAGGTCTTCTGTATCTACACACAGAAGCTGATCCTCCAATTTTCCACAGAGATGTTAAGGCCAGTAATATATTATTAGACTCTAAGTTCACAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTTGCCCCAGTTCCAGATGTTGAAGGCAATCTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACACCGGGTTACCTTGATCCAGAGTATTTCTTAACCCACAAGTTGACTGATAAAAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTGTGACTGGAAGGCCACCAATCTTCCATGGAGAAAATATTATTAGACAGGTTAATGTGGCATACCAATCTGGTGGAATATTGTCTACTGTTGATAAACGTTTGGGATCTTTTCCTTCTGAGTCTTTGGAGAAATTTTTTATTTTGGCTTTGAAGTGTTGCAAAGATGCACCAGATGAACGGCCTAAAATGGCAGAAGTTGTTAGAGAGCTTGAAAACATTTTGTCTATGATGCCTGAGTTTGATGCCATTGCTAAGGGAGTTGAATATCCTGCAAGTGATTCTGGATCAGTATTTAGTTCACAACCTTCATCATCTACTATAAAGACTCCATTTATTTCATTAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGATATACCAACCATTAGACCAAGATAG 2931 0.3883 MGLLLKTGKKNTLFSSEEIFKRSGDLYVPGMYLSKGCKCEVVLCFLFCCYFLLAAGQSTDPNEVDALRAIREKLIDVNGNLSSWSRGDPCTSQWTGVLCSNRTSDDGHLHVLQLQLLNMNLSGTLAPDIGRLSCLQILSFMWNNISGSIPSEIGNIKTLKLLLLNGNNLNGTLPEELGYLPVLNRIQIDYNNITGPIPPSFANLNSTKHFHMNNNSLTGQIPPELYRLGSLFHLLLDNNKLTGYLPSNLSEMPNLKILQLDNNNFGGNSIPDSYANMSKLLKLSLRNCNLTGQIPDLSRIPHLSYLDLSFNQLNGSIPANKLSENITTVDLSNNKLTGTIPSYFSGLPRLQKLSIANNLLSGNVSSTIWQDRTLNATEMLLLDMQNNQLTSISGSTNLPPNVTLLLRGNPLCTNNNTLAQFCGAGSDNNINGNFNGTCPSQPCPPPYEYNAQCVCVAPLLVHYRLKSPGFSDFRTYVEPFESFLTDGLNIHNNQLQINSFTWEEGPRLKMDLKLFPVYVDNGSSHLFNTSEVHRIRNMFREWDMHDNDLFGPYELLDFILLDPYNDVIDTSSSSGISKGALAGIVLGAIAGSVTLSAIVTILILRLRFKDYRTLSKRLKASRISIKIDGVRSFDYEEMALVTNNFSESAQIGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNRTLRDHLSASSKEPLSFSMRLKIALGSAKGLLYLHTEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDVEGNLPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELVTGRPPIFHGENIIRQVNVAYQSGGILSTVDKRLGSFPSESLEKFFILALKCCKDAPDERPKMAEVVRELENILSMMPEFDAIAKGVEYPASDSGSVFSSQPSSSTIKTPFISLDVSGSDLVSGDIPTIRPR. 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01316 976 SUPERFAMILY L domain-like 71 422 - -
Seca8g01316 976 Gene3D Ribonuclease Inhibitor 60 323 IPR032675 -
Seca8g01316 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Seca8g01316 976 Pfam Leucine rich repeat N-terminal domain 61 100 IPR013210 -
Seca8g01316 976 Gene3D Transferase(Phosphotransferase) domain 1 721 928 - -
Seca8g01316 976 SUPERFAMILY Protein kinase-like (PK-like) 630 926 IPR011009 -
Seca8g01316 976 CDD STKc_IRAK 651 917 - -
Seca8g01316 976 FunFam Leucine-rich repeat protein kinase family protein 609 720 - -
Seca8g01316 976 Pfam Leucine rich repeat 325 362 IPR001611 GO:0005515
Seca8g01316 976 Pfam Leucine rich repeat 183 241 IPR001611 GO:0005515
Seca8g01316 976 ProSitePatterns Protein kinases ATP-binding region signature. 651 673 IPR017441 GO:0005524
Seca8g01316 976 ProSiteProfiles Protein kinase domain profile. 645 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01316 976 SMART serkin_6 645 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01316 976 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 721 929 - -
Seca8g01316 976 Gene3D Ribonuclease Inhibitor 324 412 IPR032675 -
Seca8g01316 976 Gene3D Phosphorylase Kinase; domain 1 616 720 - -
Seca8g01316 976 PANTHER RECEPTOR-LIKE PROTEIN 55 76 918 - -
Seca8g01316 976 Pfam Protein kinase domain 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01316 976 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 61 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01316 Seca-Chr8 20909779 20921335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01316 48 923 Receptor kinase-like Gene Family AT5G01950 57.818 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca8g01316 Pkinase 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01316 - - gmx:100801035 1415.21