Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01314 ATGCAGATGGCAAAGGGTTGCTCCAGCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAAGATTTCAAAAAAATTGACTGAAATAGCAAGTCCTGCCAAAAAGAAGACCCCGCATCATCTTCCTAAACTGAAACCAAAGACTAACAGTGTAGCGGAACCTAGGCGCTCTTCTCGGGTACGAAACCCAGTTCCTTCATACCGTGAAGAGGTTAGCATGGACTTTCAAACTTCGCGGAAGAGGTCAAGGTCACATTCATCATCATGGGAAAGTTATGTTGCAAGGCCACTAGATGAAATCAAAGAAGCTACAGATGAAGAAAGAATTCGTGCTCTAGAGGCTGCCGAGGCCCTCCAAAACAACTTGCAGTCTTCGAATCCATCATTTATCAAGTCCATGGTTCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTCCCTTCTAAGTTTTGTGAGGAATATCTTCCAAAAACTGTGTATAACATGATTTTAGAGGATGAAAATGGCTCCGAATATGAGGCTGTTTACATTGGCCAAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGTGATGCACTTGTTTTTCAATTGGTTGAAGCAGCACGATTTAAGATTTATATTGTTAAAGCATTTCCAGATTCAGTTGAAGAAGTTGGAAAGGATACTTTGAAGGAAGAAGGGAATATGCGTGCCACAAAAGCAACAAAAGCGCAGAAAACTGCCAGTAATCCTGAATCAGGATCAAACAAGACAAAAAAGAAAAAACAGGCCATTGTAAATGAAACTAAGGAATCAGAAAGTTTTCAGGAACATCTGCCAGAAAGTAGCATTGGCAATGGAGTCAAACCACAGAAGGTAAATCCGACTAAGAAAACTAAGTCTTCTCGGAAAATGGAAAAGAAATCTAAAGTGCCTGCTACTGCTGAATCAAAAGGGGAAGCACAAATTGAAACTGCGAAACCAAAGACAGCTATTAAGGTGTCAAACAAGACAAGGAAGTCAAAAGAATGTTCTGTACATGAAATTGGTGACTCGGGCAACACTGAGCAGCCTCTTGCAGAAAATAATACTGTCAAACCAAGAGGGGTTAACCGGGGCAAGAAGAAAGAATCTGTTCAGATTCAAAATGCTGATAGTGAGATAAAGAAAGTTGAAACAGTTGACATAAAGAAAGTTGACTCGGGCAACACTGAGCAGCCTCTTTCAGAAAATAATACTGTCAAACCAAGAGGGGCTAACCGGGGCAAGAAGAAAGAATCTGTTCAGAATGCTGATAGTGGGATACAGAAAGTTGAACCAGTTGGAGGAGCAAGCAAATCTGTTTCACAAACACCTAGAAAAAAACCAGCTCCAAAGTTTTTCAGAAAGAAAGCTTAG 1443 0.4075 MQMAKGCSSNNYEEARKQRLEENKKRFEDLGISKISKKLTEIASPAKKKTPHHLPKLKPKTNSVAEPRRSSRVRNPVPSYREEVSMDFQTSRKRSRSHSSSWESYVARPLDEIKEATDEERIRALEAAEALQNNLQSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEYLPKTVYNMILEDENGSEYEAVYIGQRSGLSGGWRAFALEHKLDDGDALVFQLVEAARFKIYIVKAFPDSVEEVGKDTLKEEGNMRATKATKAQKTASNPESGSNKTKKKKQAIVNETKESESFQEHLPESSIGNGVKPQKVNPTKKTKSSRKMEKKSKVPATAESKGEAQIETAKPKTAIKVSNKTRKSKECSVHEIGDSGNTEQPLAENNTVKPRGVNRGKKKESVQIQNADSEIKKVETVDIKKVDSGNTEQPLSENNTVKPRGANRGKKKESVQNADSGIQKVEPVGGASKSVSQTPRKKPAPKFFRKKA. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01314 480 MobiDBLite consensus disorder prediction 415 431 - -
Seca8g01314 480 SMART B3_2 142 233 IPR003340 GO:0003677
Seca8g01314 480 MobiDBLite consensus disorder prediction 383 414 - -
Seca8g01314 480 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Seca8g01314 480 CDD B3_DNA 140 231 IPR003340 GO:0003677
Seca8g01314 480 MobiDBLite consensus disorder prediction 270 292 - -
Seca8g01314 480 MobiDBLite consensus disorder prediction 40 101 - -
Seca8g01314 480 MobiDBLite consensus disorder prediction 365 379 - -
Seca8g01314 480 SUPERFAMILY DNA-binding pseudobarrel domain 136 230 IPR015300 -
Seca8g01314 480 Coils Coil 114 134 - -
Seca8g01314 480 Gene3D - 116 233 IPR015300 -
Seca8g01314 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 60 232 IPR044837 -
Seca8g01314 480 Pfam B3 DNA binding domain 142 228 IPR003340 GO:0003677
Seca8g01314 480 Coils Coil 10 30 - -
Seca8g01314 480 MobiDBLite consensus disorder prediction 244 480 - -
Seca8g01314 480 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01314 Seca-Chr8 20892427 20905462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01314 12 232 B3 DNA Binding Superfamily AT5G58280 52.400 2.56e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g01314 B3 4.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01314 - - gmx:100786265 481.1