Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01296 ATGCTTGCTGCTGCTGCTTCTGCTTCTAGGCACCTTCTTCAACGTGATGCTAGACCCAACATTGGAGTTCGATCGCTTTTAAGTGCTTCTGGCATCACTACCAGCTACCCTATTTGCAGTACAAGAGGTTTCAGTTACGGTTATGGAATCGGTTTGAATAACCGCCAACCCAGAACATGTTCAAGTTTGCTTTTTTCTGTAAAGGGGTTCCTCTCTGATTCATCACCTTCTTCCGGTTCGCTACATGGCAGAGTAACCAGACCTTATTTATCACAACCTAGTTCAACGGTAGATGGACGGGCATTGTTCTCAACTTCTACTAGAACTGATGATGGAAGCCAGAACCAAAAGACTACTTCCACCGTTGCTAAATCACCTCCAGGGGGACAAGTTGCTGATATAAAGATCCTTCGTACACTTGCTAGTTACCTGTGGATGAAAGATAATCTTGAATTCCGGTTTCGAGTTATTGCTGCATTATTTTTACTTGTTGGGGCTAAGGTTCTGAACGTTCAGGTCCCTTTCTTATTCAAGCTTGGAGTTGATTGGTTGACAACTGCCACTGGCAATGCTGGTGCTCTTGCTTCAAATTCAAATATGATGGCTCTTTTTGCAACACCTGCAGCTGTATTGATTGGATATGGGATTGCACGTTCCGGAGCTTCTGCATTCAATGAACTGCGGACTGCTGTATTTTCTAAGGTAGCACTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCTTCTATGGTGTTCAATGTAGTACCCACCATACTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCTCCTTTTGCATGGATTACTTCCCTATCAGTTGCTGCTTATGTTATTTTTACACTGACTATAACACAGTGGAGGACTAAGTTCAGGAAAGTCATGAATAAAGCTGATAATGATGCCAGTACAAGAGCTATTGATTCGCTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGTTTACGAAGCTGATAATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTTTGAAAACCCAACGTAGTCTTGCTTTGTTGAACTTTGGTCAAAATGTTATATTTAGTACCGCTCTTTCAACAGCAATGGTGCTGTGTTCTCATGGGATCATGGATGGCACGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGCGAGACTATACAGAGTCTAGTTGACATGAAATCCATGTTTCAGCTACTCGAGGAAAGAGCAGACATTAAGGATAAAGAAAATGCAAAGCCTTTGAGATTTAATGGGGGAAGCATCCAATTTGAGAATGTACATTTCAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCATTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTTTTTGATCCTCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGAGAGGTTACCCTTGAGAGTTTGCGAAAGTCTATCGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGTCGCCTTTCAGCAACAAAAGAGGAGGTCTATGAAGCTTCTCGGAAAGCAGCAATTCATGATACTATCATGAAATTTCCTGAGAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGCTAAGTGGTGGTGAGAAACAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCACCTGCGATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTAAAGTCACTAGCAAATCATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGATTGAGCAAGGACCACATGAAGTGCTCTTAGCAAATGCAGGAAGATATGCACAACTTTGGGGACAGCAAAATAACACAGTGGATGCACTTGATGCTGCCATCAATCTGGGAGCATAA 2217 0.4109 MLAAAASASRHLLQRDARPNIGVRSLLSASGITTSYPICSTRGFSYGYGIGLNNRQPRTCSSLLFSVKGFLSDSSPSSGSLHGRVTRPYLSQPSSTVDGRALFSTSTRTDDGSQNQKTTSTVAKSPPGGQVADIKILRTLASYLWMKDNLEFRFRVIAALFLLVGAKVLNVQVPFLFKLGVDWLTTATGNAGALASNSNMMALFATPAAVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVIFTLTITQWRTKFRKVMNKADNDASTRAIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSTAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADIKDKENAKPLRFNGGSIQFENVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEASRKAAIHDTIMKFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLANHRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLANAGRYAQLWGQQNNTVDALDAAINLGA. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01296 738 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524|GO:0016887
Seca8g01296 738 MobiDBLite consensus disorder prediction 73 126 - -
Seca8g01296 738 FunFam ATP-binding cassette sub-family B member 7 129 476 - -
Seca8g01296 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 723 IPR027417 -
Seca8g01296 738 CDD ABCC_ATM1_transporter 488 723 - -
Seca8g01296 738 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 71 719 IPR039421 -
Seca8g01296 738 Pfam ABC transporter 504 653 IPR003439 GO:0005524
Seca8g01296 738 CDD ABC_6TM_ATM1_ABCB7 159 462 - -
Seca8g01296 738 Gene3D ABC transporter type 1, transmembrane domain 143 478 IPR036640 GO:0005524|GO:0016020
Seca8g01296 738 Gene3D - 479 733 IPR027417 -
Seca8g01296 738 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 488 722 IPR003439 GO:0005524
Seca8g01296 738 SMART AAA_5 513 699 IPR003593 GO:0016887
Seca8g01296 738 FunFam ABC transporter B family member 25 480 734 - -
Seca8g01296 738 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 157 454 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g01296 738 Pfam ABC transporter transmembrane region 156 441 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g01296 738 SUPERFAMILY ABC transporter transmembrane region 151 467 IPR036640 GO:0005524|GO:0016020
Seca8g01296 738 MobiDBLite consensus disorder prediction 73 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01296 Seca-Chr8 20279966 20305593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01296 324 724 Calmodulin-binding Proteins AT2G36910 35.922 5.25e-63 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01296 K05662 - gmx:100779975 1227.23