Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01272 ATGCACGGACGATTTCGATTGCGATTGCGATTTCTAGCGTTAATTCTGCGAGGCGGAGACGATTTCCAGTTCCTCTTTCCAGCGGTGATTTTGCCAAGCACGATCCCGCCTTCATCTTCAACCCTTCACGCGGCTGCCGTCTTCAATTTTTGGGTCCTCACGCACGATTCGTTAGACTGCAAACGAGAACCCCCAGGTTCCAGAACTAGTAGTATCCATTTGAAGAAAATCTGTAGAATGGTGAGAACCAAGTGGAGGTTGAGAAAAGTTTTCATCTCTGAAATCTTTGCGATGGATAGTGGTTTTGAGGACTCACATGTTAACCTAGATGACGATATGGACATTCGTTTTAGCTATAGTGTTAGCTCCGATGGAGGTGAAAGTGATGAGCCAAATGATGTTGTTGATGCCAGTGTGTCACATGATGTTGCTAATGAAGATGTGTCACATGATGAGTTGGAAAATATAGCAGACTTAACAGCGGATGAAATTTCTAATATGGAGTTTTGCAGTGAAGAAAATGCATACAAATTTTATTTTGCTTATGCAAAGTGTCATGGCTTCGTTATTAGGAGAGATGATTTAGGTCGCGATAAGAACAATAGAATGGTATGGCGACAGTTTTTATGCAATAGGGCTAGATTGAGGGACCGAAAGTACCTGATGAAACATGATAGGAAAAGAGATCACAAACCTCTCACTCGTACAAAATGCAATGCTAGGTTGCGGGTTCGCCTTGACTATAGTACATCAAAATGGAAAGTGGTGGCATTTGATCCGGCTCATAACCATGCTTTAACCCCTTCGAAATTGGTGCCATGTATTTCTACCTATCGCGGCTTAAATGACGCAGACAAAGCTCAGGATAAAGGTGTGTCATCTGATGAAAAAGATGTGCAAAACATTGAACAAGAGCGCCAAATTACTGGATCTAATGAATATAAAAGGCAAGTTAAACATAGTGGTTGCAGTAACATGAAGGAAAAGAGAGTTAAGAACTTGACACAGAAAACCACTAATGACTGTAATTTGGATAAAATGAGATGTAATGAAGGGTTTAGGGTACAGGGCAGCAACCATGTTCCTCACAGTGTTGGGAGTAATCAAAATAAAAGGAAAATGGCATTTACTGATGAGATTGACAATAATGAAAAGATTGTGAAGTCCTCTATGAAAAATTTAAAGGAGGACTGTAAAAAGAAAGTGGCATTTATTGATGAGATTGACAATAATGAAAAGATTGTGAATTCCTCTATGCAAAATTCAAGGGAGGACTATAAAAAGAAAGTGGCAATTACTGACGAGATTGACAATAATAAAAAGACTGTGATGCAAAATTCAAGGGAGGACTGTGAAATGAAACCTGTTGTATCAGGCAGTATGGGTAATGAAGAAATTCGTGAAGGGGTGGTCGTGTTACCCCCACAACATAGTACAACACCTGGTTTAGGGAGAATGCCTCCTTATTTTGGAGTGGTTCCTTGGTATCTACATTATCCCCAAGCTCCATTTCCATCGCAATTTGGGCAGAATTTTAATGGAGTCCCTAATTTGAACAGTGACCGAAATTTGTCTCATCTGCTTCAGCAATTCATAAATAATGGAAGTGGAACAGGTGGAAAGCCTGACCACCCTCAGTAA 1641 0.4028 MHGRFRLRLRFLALILRGGDDFQFLFPAVILPSTIPPSSSTLHAAAVFNFWVLTHDSLDCKREPPGSRTSSIHLKKICRMVRTKWRLRKVFISEIFAMDSGFEDSHVNLDDDMDIRFSYSVSSDGGESDEPNDVVDASVSHDVANEDVSHDELENIADLTADEISNMEFCSEENAYKFYFAYAKCHGFVIRRDDLGRDKNNRMVWRQFLCNRARLRDRKYLMKHDRKRDHKPLTRTKCNARLRVRLDYSTSKWKVVAFDPAHNHALTPSKLVPCISTYRGLNDADKAQDKGVSSDEKDVQNIEQERQITGSNEYKRQVKHSGCSNMKEKRVKNLTQKTTNDCNLDKMRCNEGFRVQGSNHVPHSVGSNQNKRKMAFTDEIDNNEKIVKSSMKNLKEDCKKKVAFIDEIDNNEKIVNSSMQNSREDYKKKVAITDEIDNNKKTVMQNSREDCEMKPVVSGSMGNEEIREGVVVLPPQHSTTPGLGRMPPYFGVVPWYLHYPQAPFPSQFGQNFNGVPNLNSDRNLSHLLQQFINNGSGTGGKPDHPQ. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01272 546 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 102 321 - -
Seca8g01272 546 Pfam FAR1 DNA-binding domain 177 267 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01272 Seca-Chr8 19877498 19884236 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g01272 FAR1 1.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01272 - - ccaj:109794460 186.422