Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01256 ATGTTGGATGATGTTATGCCCGTGGCGTGGAGTGCAGCAGTAATTCAGCAGAGGCTGTGCTATGTTGTTGAAAACTTGTTTTTTATAATGAGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTTATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTATACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGCTGGCCGAATTCTCATTGGCGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAACCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTTTTTCCCCTCAGATTGAAACGACCATGGCATCCCGGCACGTCTTCTTTTCATGATGGCAGAGATGACCCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGATCAAGGTCTCAATTCCCTGAATTTTCAAGGTGCTGGTTTATTGCCATGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCAGCTGGTTTGCAGAACATAGGGAGTGGAGATCTATTGAGGCAGCAAATGATGAATTTTCAACAGCCTTTCAATTATGTCCAACAATCAGGAAACCCCAATCCTGCTTTGCAGCTTCAGCAAGCAATTCAACAACCCATATCTTCTAATATCCTGCAGCCACAAACCCAAGTATTGGCAGAGAACCTGTCTCAACACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAGCGGCACAGCAGCAGCAACAACAACACACTTATCAAGATTCTCTTTTAATCCAAGGTGATCAACTCCATCAGAGGCAACACTCCAGTTTGCCCTCACCATCATATTCAAAACAAGATTTCTTAGATTCAAACATCAAGTTTGCTGCTTCAGTTTCGCCAGGACAAAACATGCTCAGTTCTCTTGGTTCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGATGACCGAACAGTTACCTCAACAATCATGGGCCCAAAAGTATACACCTTTGCAGGTCAATGCCTTTAGCAACTCAATGTCACATGTGCAATATTCTGGAAAAGATACTGCAATGGTGTCACCACATGGTAACTCAGATACCCAAAATCCTATTCTATTTGGTGTCAATATCGATTCATCTGGGCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACCGCACCAACTGATACTGATGCAACAACAATGCCATTAGGGGAGTCTGGATTCCAGGGTCCCCTATATCCTTGCATGCAAGATTCTTCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACGCCCAAAACCAGACGCGAACATTTGTCAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTCTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAAAGGCTGAATAGCAGTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2070 0.443 MLDDVMPVAWSAAVIQQRLCYVVENLFFIMRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDDPTNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGLQNIGSGDLLRQQMMNFQQPFNYVQQSGNPNPALQLQQAIQQPISSNILQPQTQVLAENLSQHLLQKSHNNREDQAAQQQQQQHTYQDSLLIQGDQLHQRQHSSLPSPSYSKQDFLDSNIKFAASVSPGQNMLSSLGSEGSGNLLNLSRSGQSMMTEQLPQQSWAQKYTPLQVNAFSNSMSHVQYSGKDTAMVSPHGNSDTQNPILFGVNIDSSGLLLPTTVPRYTTAPTDTDATTMPLGESGFQGPLYPCMQDSSELLQSAGQVDAQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSSGAESHDIVSGLPSIGSLEY. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01256 689 Gene3D - 137 209 - -
Seca8g01256 689 FunFam Auxin response factor 558 652 - -
Seca8g01256 689 FunFam Auxin response factor 137 209 - -
Seca8g01256 689 ProSiteProfiles PB1 domain profile. 563 647 IPR000270 GO:0005515
Seca8g01256 689 Pfam AUX/IAA family 556 647 IPR033389 -
Seca8g01256 689 Pfam B3 DNA binding domain 31 74 IPR003340 GO:0003677
Seca8g01256 689 Gene3D - 6 74 IPR015300 -
Seca8g01256 689 SUPERFAMILY DNA-binding pseudobarrel domain 31 102 IPR015300 -
Seca8g01256 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 652 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g01256 689 SUPERFAMILY CAD & PB1 domains 561 637 - -
Seca8g01256 689 Gene3D - 558 652 - -
Seca8g01256 689 ProSiteProfiles B3 DNA-binding domain profile. 1 75 IPR003340 GO:0003677
Seca8g01256 689 Pfam Auxin response factor 99 182 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca8g01256 689 MobiDBLite consensus disorder prediction 657 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01256 Seca-Chr8 19339225 19345744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01256 32 660 B3 DNA Binding Superfamily AT5G37020 66.667 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca8g01256 AUX_IAA 3.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01256 - - gmx:100780393 1173.3