Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01255 ATGAAGCTTTCAACATCAGGGATGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAACTATGGCATGCATGTGCGGGTCCCTTAGTGTCCCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAATAGAGAAGTTGATGGGCACATTCCCAATTACCCGAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAAAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTGACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCACTGGATTTCTCACAGCAACCACCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGGGAATGGACTGAAAGGTTCTTTGGTGTGAGAGATTGGAAAGGTATTTTCGACGTGGAAAGAAGGATGTGCATTAAGGTAGTTCACCTCACCACCCTTGACAAAATCTGA 663 0.4585 MKLSTSGMGQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFREWTERFFGVRDWKGIFDVERRMCIKVVHLTTLDKI. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01255 220 Pfam B3 DNA binding domain 128 200 IPR003340 GO:0003677
Seca8g01255 220 SUPERFAMILY DNA-binding pseudobarrel domain 112 187 IPR015300 -
Seca8g01255 220 CDD B3_DNA 127 198 IPR003340 GO:0003677
Seca8g01255 220 Gene3D - 126 208 IPR015300 -
Seca8g01255 220 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 186 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g01255 220 SMART B3_2 128 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01255 Seca-Chr8 19336392 19338157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01255 1 219 B3 DNA Binding Superfamily AT1G30330 74.091 4.38e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g01255 B3 2.3e-08 CL0405