Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01230 ATGGCACCTGTTTCATTGCCACCAGGTTTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTATTACCTAAAAAGGAAGATCAATGGCCGTAAGATTGAGTTGGAAATCATAGCTGAAGTTGATCTCTATAAGTGTGAACCATGGGACTTGCCAGCAGGGAAGTCATTGTTACCAGGAAATGATTTGGAGTGGTATTTTTTTAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGAGCAACAAAATCTGGATATTGGAAGGCTACAGGGAAGGATAGAAAAGTGAACTCTCAAGGTAGAGCTGTTGGTATGAAGAAAACCCTAGTTTACTATAGAGGAAGAGCACCCCATGGTTGTAGAACCAATTGGGTTATGCATGAATATCGTCTTGATGAGAGGGAATGTGAAACCCCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGCAGTGATTGCACCAAAAGTTGGGGGGCATAATTATGTTAACGTTACTAGCCATGCCAACCATCAGATTACAAGCGATCAGTCATCAAGCATTGAGTTATACTCTGAAGGAAGGGGTGAAGATTTAGATAGCTCAAATTATATGATGGGGCCCATTGATATTACTAATTGCTCACCCCACAATATGAGAAATATTGACTCTTCTCTCAATAATATCAATGGTGCTGGGACAAGGGATCATGGGAAATGGTCACACTTCTCACAAGAAGACTTATTTAGTCTTCCAACTTCTTCATTTCCTAATTATGGAGCCATAACATACCCTCCATCCAAGGTAGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGCTATGCCTCCATTGGAGGTGGAGGACTTCCCTCAAGTTGGAATCTCTGAACTGAAGATGACACAAGCCATGCATGGAAGCAGAACGGAAACAGATATATTGGAAGAAATTCTTTCAGTTGCTCATGCTTCTCAAGAATTGATAAATCAGCCCAACATTAACTACTCACAAGCATGGGGTGGCAATGAAAATAATTATGCTTCTCGTGAAAATGATTTTACTTTCATGGTTAATGGCACAAACTACAATCACATAAATATTGATCACATGAGATATGTTGACAAAACATGGGAAGATCCAAACACAAGGTCGATAGAGATTGGAGATTTGGATGAAGAATTCAAGGGTGAGAGGATGGTGGAGAATTTAAGATGGGTTGGGATGTCTACAAAATATTTAGAAAAGATGGAAGAACAAAGGATCGTTCCAATTGAGGATATTTCAAGCTTCCAAACAAACAGGGAAGAAAATGAGGTGCAAGAATCTGAGCAAGACAACAACAACAAGGAACACAATAACCCTGATATCAATGATTTCTCATTAGGTTTCATCAATGATGGTGATCCCAACGACAACTTTATAGAAGATGGTAACATAGATGATTATTCAAGTTCTCCAAGCTTTGAGGTCGTTGAGGAAATAAAGGTTAGTCATGGATTGTTTGTTTCAACTGGTCAAGTAGCCATGACATTCTTTCACCAAATAGTTCCTTCACAAACCCTCCAAGTGCACCTCAATCCAGTAATGATGGTAAACAATGATCATTCTATAGAGAATGCAGAGGCAATAATGATGATAGTGGAGAACCAAGGGTCTTTCTTTAGCAAGTTTAAGGCCTATGTGATGGGGAAACTAATAAAGCCATCTAAGACAATAGCAAGTGTGATTGTATTCTTCTTTGCACTTTTGTTGATGCCTATGAAGGATGAAGTGGAATTTTGGAAACCAAACCCTAAGGATGTGAAGGATAAATGTTGTGTTAGTGATACCAACATGAAGAGAATGGGACAATCATATGAGATATTCAAGTGGAATGAGTCAAATGAGGTTTGGTTTGTTGGTGTCAAAAGTGAGAAAGGATTAAGTGCGATCATGAAGAAAATTGGCATTTTCCTCACCATATCTTTGGCTCTTTGTACCATGTGGGCTAACCACAATATAGTTAACCCTTGA 2022 0.3952 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIAEVDLYKCEPWDLPAGKSLLPGNDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQGRAVGMKKTLVYYRGRAPHGCRTNWVMHEYRLDERECETPSGLQDAYALCRVFKKTAVIAPKVGGHNYVNVTSHANHQITSDQSSSIELYSEGRGEDLDSSNYMMGPIDITNCSPHNMRNIDSSLNNINGAGTRDHGKWSHFSQEDLFSLPTSSFPNYGAITYPPSKVDIALECARMQHRFAMPPLEVEDFPQVGISELKMTQAMHGSRTETDILEEILSVAHASQELINQPNINYSQAWGGNENNYASRENDFTFMVNGTNYNHINIDHMRYVDKTWEDPNTRSIEIGDLDEEFKGERMVENLRWVGMSTKYLEKMEEQRIVPIEDISSFQTNREENEVQESEQDNNNKEHNNPDINDFSLGFINDGDPNDNFIEDGNIDDYSSSPSFEVVEEIKVSHGLFVSTGQVAMTFFHQIVPSQTLQVHLNPVMMVNNDHSIENAEAIMMIVENQGSFFSKFKAYVMGKLIKPSKTIASVIVFFFALLLMPMKDEVEFWKPNPKDVKDKCCVSDTNMKRMGQSYEIFKWNESNEVWFVGVKSEKGLSAIMKKIGIFLTISLALCTMWANHNIVNP. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01230 673 Coils Coil 435 455 - -
Seca8g01230 673 MobiDBLite consensus disorder prediction 439 455 - -
Seca8g01230 673 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Seca8g01230 673 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Seca8g01230 673 FunFam Nac domain-containing protein 86 15 160 - -
Seca8g01230 673 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca8g01230 673 MobiDBLite consensus disorder prediction 430 461 - -
Seca8g01230 673 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 247 - -
Seca8g01230 673 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01230 Seca-Chr8 19006134 19010705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01230 1 588 NAC Transcription Factor Family AT1G65910 47.421 3.72e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g01230 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01230 - - gmx:100809019 961.829