Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01226 ATGAGCGAAGCGCAGAAATACGTGTGGAAAGGGGCCATTCCTCTCCAGATTCATCTCCATGAATCTGAAGTCACCACTCTCCCTCCTCCTCCACCCGCCCTCGTCTTAGCTCCTCGGGTAGGTTACTTGCCTTTGTTGATTTCTCTCTTGAAGCCTCACTTCAGCAGTGCACTTCCCCCTGGAGTAGACACCATTTGGTTTGAGTACAAAGGACTACCTCTCAAGTGGTATATACCGACTGGAGTTCTTTTTGATCTTTTATGTGCAGAGCCAGAAAGGCCATGGAATTTAACAGTACACTTTAGAGGATATCCAAGTAATTTATTGCTTCCATGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATGTGATAAATGGGAATTGCAAGAATGTCATGAACATGTCTCAACCTGATCAAGTGGAGCTCTGGGACTCTGTTTTAAATGGTAATTTGGAATCTTATCGACGGGTGTCATCTAAACTTAAGCTTGGAACTTTTGAAGATGAATATACAGAAAATATCAATTCAGTCTCGACTAAATCACAACAAAGTACTGGAGATACTGATGCTGCTGGACAAGTGAAGACTGGAAGGATTCCTGTTCGTTTATATGTGAGGACCGTCACTGAGGATTTTGGTGATTTTGAAGATGCTCCTCAAATTGATAATTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTCATAAGGAAGATGGTAAATTCTTTAGCTTAAATGATGCAGTTAAAAGACTACTACCTGAGTTTTTTCCAGAAAGTTCTTTTGTTAATGAAGGAGATGAAAGCATTAACCAAAGTACAGAAGAGGGAGAAAGTTCAGGTGATCCCGGGTCATCTTGCCACACACTTGACATTGCAGAAATCAAGTTTGTACGCATTCAAGGGATAGAGCCAAGTTTGGAGACACCCTTTTCTTGGGTGGTTAACAACTTAATGAATCCTGAGTATTTTCTTCATATGTGTGTTTGCTTGAAAGTTTCAGAGGGAGACAAGGTTAATGTTTTGGACTTTTGGGCTAGCCCTTATTGTGCTAGAGTGAAAATTGCTTTGGAAGAGAAAGGGGTGGACTATGTGGATAGTCAAGAGGATTTGTTTGGGAGAAAGAGTGAGCTTCTGCTGAAGTCAAATCCTATTCATCAGAAAGTTCCTGTGTTCTTGCACAATGACAAACCTGTCACTGAATCTGCTATCATTGTTAGCTACATTGATGAGGTGTGGCCTTCCAACTCCCTGCTTCCAACTTGTGCATATGATCGTGCCCAAGCTAGATTCTGGGCTGACCTCATTGACAAAAAGGTATTTGAAACTGGGAGGAGTATATGGGGGAGCAATGGAGAAGAGAGAGAAGTGGGCACTAGGGACTTCATTGAAGTTTTAAAGCATTTGGAGGAAGCTCTTGGAGAGAAAAACTACTTTGGTGGTGATGCCTTTGGGTATGTAGACATCATAGCTATTCCTCATTCTGCATGGTTTTTAACATATGAGAACCTTGGGGGCTTCAAAGTTGAAGATCATTGCCCAAAAATCTCAGCTTGGATTAAGAGGTGCTTGCAAAGGCAATCTGTCAACAAAGTTCTGCCAGACCCAGAAAAGGTCTACCAGTTTGTCCTGCATTTCAGGAAGATGTTAGGCCTTGATTGA 1692 0.4184 MSEAQKYVWKGAIPLQIHLHESEVTTLPPPPPALVLAPRVGYLPLLISLLKPHFSSALPPGVDTIWFEYKGLPLKWYIPTGVLFDLLCAEPERPWNLTVHFRGYPSNLLLPCEGEDSVKWSFINSLKEAAYVINGNCKNVMNMSQPDQVELWDSVLNGNLESYRRVSSKLKLGTFEDEYTENINSVSTKSQQSTGDTDAAGQVKTGRIPVRLYVRTVTEDFGDFEDAPQIDNWDKVSYINRPVEIHKEDGKFFSLNDAVKRLLPEFFPESSFVNEGDESINQSTEEGESSGDPGSSCHTLDIAEIKFVRIQGIEPSLETPFSWVVNNLMNPEYFLHMCVCLKVSEGDKVNVLDFWASPYCARVKIALEEKGVDYVDSQEDLFGRKSELLLKSNPIHQKVPVFLHNDKPVTESAIIVSYIDEVWPSNSLLPTCAYDRAQARFWADLIDKKVFETGRSIWGSNGEEREVGTRDFIEVLKHLEEALGEKNYFGGDAFGYVDIIAIPHSAWFLTYENLGGFKVEDHCPKISAWIKRCLQRQSVNKVLPDPEKVYQFVLHFRKMLGLD. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01226 563 SFLD Main.3: Omega- and Tau-like 346 560 IPR045073 -
Seca8g01226 563 PANTHER AUTOPHAGY PROTEIN 5 2 342 IPR007239 GO:0005737|GO:0006914
Seca8g01226 563 MobiDBLite consensus disorder prediction 273 296 - -
Seca8g01226 563 FunFam Autophagy protein 5 105 172 - -
Seca8g01226 563 Pfam Autophagy protein Apg5 76 340 IPR007239 GO:0005737|GO:0006914
Seca8g01226 563 SFLD Main (cytGST) 346 560 - -
Seca8g01226 563 Gene3D - 432 563 - -
Seca8g01226 563 FunFam Tau class glutathione S-transferase 344 431 - -
Seca8g01226 563 Gene3D Glutaredoxin 344 431 - -
Seca8g01226 563 FunFam Autophagy protein 5 1 104 - -
Seca8g01226 563 Pfam Glutathione S-transferase, N-terminal domain 349 421 IPR004045 -
Seca8g01226 563 SUPERFAMILY GST C-terminal domain-like 421 560 IPR036282 -
Seca8g01226 563 Gene3D Autophagy protein Apg5, helix rich domain 105 172 IPR042526 -
Seca8g01226 563 FunFam Autophagy protein 5 191 343 - -
Seca8g01226 563 CDD GST_C_Tau 433 556 IPR045074 GO:0004364|GO:0006749
Seca8g01226 563 MobiDBLite consensus disorder prediction 274 296 - -
Seca8g01226 563 CDD GST_N_Tau 349 423 - -
Seca8g01226 563 Gene3D - 191 343 - -
Seca8g01226 563 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 347 427 IPR004045 -
Seca8g01226 563 FunFam Glutathione S-transferase U20 432 563 - -
Seca8g01226 563 SUPERFAMILY Thioredoxin-like 351 450 IPR036249 -
Seca8g01226 563 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 432 552 IPR010987 -
Seca8g01226 563 Pfam Glutathione S-transferase, C-terminal domain 472 532 - -
Seca8g01226 563 Gene3D - 1 104 IPR042527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01226 Seca-Chr8 18951986 18962954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01226 345 563 Glutathione S-transferase Gene Family AT1G53680 56.306 4.50e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01226 K08339 - gmx:100789045 616.305