Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01224 ATGTCACTTGCTGCTTTCACACTAACCGTTCTCTTCTTCACACTCTCTTCAACGGTCACTTCTCACTACTCTTCCTCTTCATTTCCCCAACCTCCTCCTTCTCTAGATTCTTCTTCTTCCTCTTCGCTCTCCGAATGGCGATCTGCGCGCGCCACCTACTACGCCGCCGCCGATCCCCGTGACACTGTCGGCGGCGCGTGCGGCTACGGTGACCTCTCTAAGGCCGGTTACGGCATGGCGACGGTTGGGCTCAGCGAGGCGCTTTTCGAGCGCGGCCAGATCTGTGGCGCGTGCTTCGAGCTTCGCTGCGTTGAGGACATGCGGTGGTGTATCCCCGGCACGTCAATCATCGTCACTGCTACCAATTTCTGCGCACCGAACTATGGATTCACATCTGATGGAGGGGGACACTGTAACCCTCCCAATAAGCACTTCGTTCTCCCTATTGAAGCCTTCGAGAAGATCGCTATCTGGAAGGCTGGGAACATGCCTCTTCAGTATCGCAGGATAAAGTGCAGAAGGGAAGGTGGAATCCGATTTACAGTCACTGGTTCTGGTATCTTCATTTCAGTGCTGATCAGCAATGTTGCCGGCCATGGAGACATAGTATCGGTGAAGGTTAAGGGCTCAAGAACCGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCATTACTACAGAATCAACCTCTTTCGTTTGAGGTTACTGGTAGCGATGGGAAAACAGTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTCGAGACTTAA 816 0.5184 MSLAAFTLTVLFFTLSSTVTSHYSSSSFPQPPPSLDSSSSSSLSEWRSARATYYAAADPRDTVGGACGYGDLSKAGYGMATVGLSEALFERGQICGACFELRCVEDMRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPLQYRRIKCRREGGIRFTVTGSGIFISVLISNVAGHGDIVSVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGKTVTSYNVAPKDWSFGQTFEGKQFET. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01224 271 Gene3D - 32 173 IPR036908 -
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Seca8g01224 271 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Seca8g01224 271 FunFam Expansin 177 269 - -
Seca8g01224 271 Gene3D - 177 269 IPR036749 -
Seca8g01224 271 PRINTS Expansin signature 223 244 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 252 268 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 103 114 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 176 188 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Seca8g01224 271 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Seca8g01224 271 SUPERFAMILY Barwin-like endoglucanases 40 195 IPR036908 -
Seca8g01224 271 SUPERFAMILY PHL pollen allergen 174 266 IPR036749 -
Seca8g01224 271 Pfam Lytic transglycolase 82 167 IPR009009 -
Seca8g01224 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 266 IPR007117 -
Seca8g01224 271 CDD DPBB_EXPA_N 45 172 - -
Seca8g01224 271 Pfam Expansin C-terminal domain 178 255 IPR007117 -
Seca8g01224 271 PANTHER EXPANSIN-A15 8 269 IPR002963 GO:0009664
Seca8g01224 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 177 IPR007112 -
Seca8g01224 271 SMART dpbb_1 81 167 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01224 Seca-Chr8 18942071 18945712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01224 45 271 Expansin Gene Family AT3G03220 84.581 2.26e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01224 - - gmx:100809568 463.766