Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01223 ATGCAGGGTCAAAATGGATTTACTAGATCACAGGGTGGTCTTCCAGTTGGAAATGGAGCATCCTTAAATTCTGGGTTGCATTCTGTTGCACGTATTCAAAAATTGAATGACCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGGAAACCTTATACTATCACCAAGCAGAGAGAAAGGTGGACAGATGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGCTGTATGGCCGGGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACAGCGGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTACTAAGGTTGATTGCTCTATTCCAGTACCTATAATCTACCATATTATTAATATAACATACCAGCAGATTCTTAGAGACTCTAGTGGGAATAGTACAACCTCAGTGGAATCAATTGAAATTCCACCTCCACGACCAAAGAGAAAGCCAAATCATCCTTACCCACGTAAACTAGTAGAGATCCCAAATAATGAATTTTCCATCACAGAACAGCCACTGAGGTCTAATTCTCTTAAGTCATCAGATTTTGGTCAAGAAAACAAGTCTCCCAAGTCAGTATTATCTGCAGTTATTTCAGAAACCCTTGGATCCTCAGATTCAGATACTCCAACTGGAAGTTTGTCCCCAGTTTCATCCATCAGTGCTGTCAATACCAGCAGATTTCCACTAATTGAACCCAAAACATCATCTGAGGAAGATGGTTCTCCACCCCCAAATGGACTAAATGCTGGCTCAGCTCATGATATGGAACCTCTTGTGAAACTTGAGCTTTTCTCTAAGGAAAATGCTTCTACCAAAGATGATGCAGCAGAAGAATCATCTGGTAGAACTCTCAAACTTTTTGGAACAACTTTGCTGGTAACAGATACCTGCAGACAATCTTCTCCTCCAACAATGGAGACATGTAAACCAATACCTTCTACCATGTATCTTATGCAACAACTTCAGAGTGGATGTTCAGATATTGCAACTATTGTTCCTTGGTGGACTCTTTCCCACAATGCACCATCCATGCCACTGCACAAGGAGCATGAGGGGAAACATCTATGTTCTAACCTTGGAGAATGTGAAGATAAGGAAGTTCAAAAGGAAGGATCTTGGACTGGTTCCAACACTAGTTCAATCAATGATGGAGAGAGCAATGAAAGATCATCATATGATCAAGCAAAAAATGTGCATTCCCTTATAGGAAACACTAGACCAAGTGAAACATCAGCTATATCTGAGTTAAGGGTGAGGCCTAAAACCTGTGGGAAAGGTTTTGTACCATATAAAAGGTGTTTTGCAGAGAGAGAGAACCAGTGCTCACCAGTAACAACAAATGAGGAGAGGGAAGAGCAACGTATCAGGCTTTCCTTATAG 1392 0.4088 MQGQNGFTRSQGGLPVGNGASLNSGLHSVARIQKLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKVDCSIPVPIIYHIINITYQQILRDSSGNSTTSVESIEIPPPRPKRKPNHPYPRKLVEIPNNEFSITEQPLRSNSLKSSDFGQENKSPKSVLSAVISETLGSSDSDTPTGSLSPVSSISAVNTSRFPLIEPKTSSEEDGSPPPNGLNAGSAHDMEPLVKLELFSKENASTKDDAAEESSGRTLKLFGTTLLVTDTCRQSSPPTMETCKPIPSTMYLMQQLQSGCSDIATIVPWWTLSHNAPSMPLHKEHEGKHLCSNLGECEDKEVQKEGSWTGSNTSSINDGESNERSSYDQAKNVHSLIGNTRPSETSAISELRVRPKTCGKGFVPYKRCFAERENQCSPVTTNEEREEQRIRLSL. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01223 463 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Seca8g01223 463 MobiDBLite consensus disorder prediction 375 416 - -
Seca8g01223 463 CDD SANT 61 104 IPR001005 -
Seca8g01223 463 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca8g01223 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca8g01223 463 SMART sant 58 106 IPR001005 -
Seca8g01223 463 Gene3D - 61 109 - -
Seca8g01223 463 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Seca8g01223 463 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Seca8g01223 463 MobiDBLite consensus disorder prediction 167 195 - -
Seca8g01223 463 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Seca8g01223 463 MobiDBLite consensus disorder prediction 135 195 - -
Seca8g01223 463 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Seca8g01223 463 MobiDBLite consensus disorder prediction 371 418 - -
Seca8g01223 463 MobiDBLite consensus disorder prediction 235 256 - -
Seca8g01223 463 PANTHER SWI/SNF COMPLEX-RELATED 42 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01223 Seca-Chr8 18925040 18927848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g01223 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01223 - - gmx:778060 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01223 8 18925040 18927848 Seca8g01223 8 18925040 18927848 ECH