Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01214 ATGGTTCTCTCCAAAACCGTCTCCCATTTGGACGTCTCTGTCCATTCAACCTTCGCCTCTCGCTATGTCCGAGCCTCCCTTCCCAGGTTCAAGATGGCGGAGAAGTCGATCCCGAAGGAAGCAGCATATCAGATCATAAACGATGAGTTGATGCTTGACGGAAATCCGAGGCTGAACCTGGCGTCGTTCGTGACAACGTGGATGGAGCCAGAATGTGACAAGCTCATCATGTCTTCCATTAACAAAAACTACGTTGACATGGACGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAGTCAGAGCCAGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAGAGGAAGTGGCAGAACAAAAGGAGAAGTGAAGGGAAGCCTATTGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTTAGTGAAGGATACTATGTAATGGACCCTGAAAAAGCCGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAGGCGCTTAAATGATCTCCTAGAGGAAAAAAATAAGGAAACAGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTTTAGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATCTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGTCTGGGTTACGAGGGATATAGAAATGTGATGGAAAACTGTAAAGACAACATGGTTGTACTTAAGGAAGGACTTGAGAAAACAGGTCGCTTTGACATTGTATCCAAAGATGAAGGTGTACCATTGGTGGCATTCACTTTAAAGGACCACAACCATTTTGATGAATTCCAGATCTCTGATATGTTGAGGCGTTTTGGTTGGATAGTACCAGCATACACAATGCCCCCAGATGCACAACATGTAACAGTGCTCCGTGTTGTGATTAGGGAGGACTTTTCACGCACCCTTGCAGAGCGTCTTGTTAATGATATTACCAAAGTGTTACATGAGCTTGATTTGCTTCCTGCAAAGATACTCAATAGCAACGCCATAACTATTACTGGAGAAGAAGGTGAAAAAATTGGTGGCAAAGTGATTATTAAGAAGAGTGCTTTGGAGACCCAAAGGGAAATCACTGCAGCTTGGAAGAAATTTGTGATGGACAAGAAGAAGATGAATGGTGTTTGTTAG 1509 0.4447 MVLSKTVSHLDVSVHSTFASRYVRASLPRFKMAEKSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRKWQNKRRSEGKPIDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVRRLNDLLEEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCKDNMVVLKEGLEKTGRFDIVSKDEGVPLVAFTLKDHNHFDEFQISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVNDITKVLHELDLLPAKILNSNAITITGEEGEKIGGKVIIKKSALETQREITAAWKKFVMDKKKMNGVC. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01214 502 FunFam Glutamate decarboxylase 361 448 - -
Seca8g01214 502 Coils Coil 214 234 - -
Seca8g01214 502 FunFam Glutamate decarboxylase 1 65 - -
Seca8g01214 502 SUPERFAMILY PLP-dependent transferases 14 444 IPR015424 -
Seca8g01214 502 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca8g01214 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca8g01214 502 Gene3D - 66 360 IPR015421 GO:0003824
Seca8g01214 502 Gene3D - 361 448 - -
Seca8g01214 502 CDD DOPA_deC_like 59 439 - -
Seca8g01214 502 Gene3D - 1 65 - -
Seca8g01214 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca8g01214 502 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01214 Seca-Chr8 18789959 18795424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01214 1 502 Calmodulin-binding Proteins AT5G17330 84.462 0.0 892