LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g01212	ATGGGATTCTCTGCCACTTCGTGCCATCGCTCATTGTCTTGTTCGGTAGTCTCTTCTGTTGAATTTGACTTTGGCACTTTAACATTGAGCAGTCTCAAGCTTCTCGGTGATGCCCATTTGAACAACGGCACCGTCAGTCTCACCCGTGACCTCGCCGTTCCCATCTCCGGCGCCGGTCAGGCCTTATATTCCCGTCCCATCAGATTCCGGCAACCGGGGACCCGCATTCCGGCGAGCTTCACCACCTTCTTCTCTTTCTCTGTCACCAACCTGAACCCTTCATCCATCGGCGGTGGTCTCGCTTTTGTTATTTCTCCTGATGGCGAGACCCTCGGTGACGCCGGTGGGTACCTTGGCCTGGCCGGCGGAGTCGCCGGCGGGTATGTCGCCGTGGAGTTTGATACCCTCATGGACGTGGAGTTCAAGGACATTAATGGGAATCATGTTGGGGTGGACTTAAACAGCGTCGTTTCGACCCAAGTTGGTGACTTGGGTTCAATTGGGGTTGATCTCAAGAGTGGTGACACAGTGAACGCGTGGATCGAGTTTGATGGATCCAGTAAAGGGTTGAATGTTTGGGTTTCGTACTCTAATCTCAAACCAAAAGATCCCATTTTGTCGATGAATCTTGATATGGGTCAGTACTTGAACGATTTCATGTATGTGGGGTTCTCTGGTTCAACACAGGGTAGCACAGAGACTCACAGGGTGGAATGGTGGAGCTTTAGCTCCTCTTTTGGCTCTTCTTCGGCGGCTCCGCCGCCGCCTCCGGCGGTTAGTTTGATGAATCCGACGGCGAATTCAGTTAAGTCTCCACCTCCTTCTTTGGCTCCATCAATGAATTCATCAAATGAAGAACGAAAAGAGAGCAAGTCTTCTTGCCACAATGGTCTTTGCAAGCAAGGTTTGGGAGCTGTTGCTGGGGTTGTCACTGCTGGGGCTTTTGTTTTGGCTATGTTTGCTGGGTCATTGTTTTGGGTGTATTCTAAGAAGGTGAAGAAAGTTAACAGGTTTGATTCCCTTGGATCAGAGATTATCAGAATGCCAAAGCAGTTTAGCTACAAGGAGCTCAAGTCAGCTACAAAGTGCTTCAATGCTAATAGGATAATTGGTCATGGTGCTTTTGGGACTGTGTATAAGGGCATTATGCCTGAGAGTGGGGACATTGTTGCTGTGAAGAGATGTAGCCATAGTAGTCAAGGTAAGAATGAGTTTTTATCTGAGTTATCCATAATTGGGAGCCTTAGACATCGGAATCTTGTTCGTCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCTAATGGGAGTTTAGATAAGGCTTTGTTTGAGGCTAGAACACCTCTTCCATGGTCTCACAGGCGCAAGATTTTGTTAGGTGTGGCTTCTGCTTTAGCCTACTTGCATCAAGAGTGTGAGAATCAGGTAATTCATAGAGACATTAAGACTAGTAACATAATGTTGGATGAAGGGTTCAATGCTCGTTTGGGAGATTTTGGGTTAGCAAGGCAAACTGAGCATGATAAGTCTCCGGATGCTACTGTTGCTGCTGGAACAATGGGGTACTTGGCACCTGAGTATCTCCTTACAGGTAAAGCTACTGAGAAAACTGATGTGTTCAGTTATGGTGCTGTGGTTCTTGAGGTGGCCAGTGGGAGAAGACCAATAGAGAAAGATGCCACTGCGGCTGGTAAAGTTGGGGTGAGCAGCAATTTGGTTGAATGGGTTTGGAGTTTGCACAGGGAAGGAAGGTTGCTAATGGCAGCTGATCCAAGGCTTGAGGGTGAGTTTGATGAGGGGGAGATGAGGAGGGTACTCTTGGTTGGGCTAGCTTGCTCCCATCCTGATCCATTGGCTAGACCCACAATGAGGGGTGTGGTTCAGATGCTGGTAGGTGAGGCTGAAGTGCCTATTGTTCCAAGAACTAAGCCATCTACAAGTTTGAGTACTTCACACTCCCACCTCTTACTGAGCTTGCAAGATAGTGTATCTGACTGTGATGGTATAATCACCATCTCTACCTCCACATCAGAGAACAGCTTCAATGGTGGAGATATAGTCTGA	2085	0.4796	MGFSATSCHRSLSCSVVSSVEFDFGTLTLSSLKLLGDAHLNNGTVSLTRDLAVPISGAGQALYSRPIRFRQPGTRIPASFTTFFSFSVTNLNPSSIGGGLAFVISPDGETLGDAGGYLGLAGGVAGGYVAVEFDTLMDVEFKDINGNHVGVDLNSVVSTQVGDLGSIGVDLKSGDTVNAWIEFDGSSKGLNVWVSYSNLKPKDPILSMNLDMGQYLNDFMYVGFSGSTQGSTETHRVEWWSFSSSFGSSSAAPPPPPAVSLMNPTANSVKSPPPSLAPSMNSSNEERKESKSSCHNGLCKQGLGAVAGVVTAGAFVLAMFAGSLFWVYSKKVKKVNRFDSLGSEIIRMPKQFSYKELKSATKCFNANRIIGHGAFGTVYKGIMPESGDIVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDATAAGKVGVSSNLVEWVWSLHREGRLLMAADPRLEGEFDEGEMRRVLLVGLACSHPDPLARPTMRGVVQMLVGEAEVPIVPRTKPSTSLSTSHSHLLLSLQDSVSDCDGIITISTSTSENSFNGGDIV.	695

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g01212	694	FunFam	L-type lectin-domain containing receptor kinase VIII.1	440	655	-	-
	Seca8g01212	694	Pfam	Legume lectin domain	20	251	IPR001220	GO:0030246
	Seca8g01212	694	FunFam	L-type lectin-domain containing receptor kinase VIII.1	18	255	-	-
	Seca8g01212	694	MobiDBLite	consensus disorder prediction	262	283	-	-
	Seca8g01212	694	SMART	serkin_6	364	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g01212	694	Gene3D	Transferase(Phosphotransferase) domain 1	440	644	-	-
	Seca8g01212	694	SUPERFAMILY	Concanavalin A-like lectins/glucanases	18	253	IPR013320	-
	Seca8g01212	694	ProSiteProfiles	Protein kinase domain profile.	364	646	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g01212	694	CDD	lectin_legume_LecRK_Arcelin_ConA	36	240	IPR001220	GO:0030246
	Seca8g01212	694	SUPERFAMILY	Protein kinase-like (PK-like)	346	662	IPR011009	-
	Seca8g01212	694	MobiDBLite	consensus disorder prediction	253	294	-	-
	Seca8g01212	694	CDD	STKc_IRAK	370	637	-	-
	Seca8g01212	694	PANTHER	-	47	647	-	-
	Seca8g01212	694	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	483	495	IPR008271	GO:0004672\|GO:0006468
	Seca8g01212	694	Gene3D	-	17	253	-	-
	Seca8g01212	694	FunFam	L-type lectin-domain containing receptor kinase VIII.1	328	439	-	-
	Seca8g01212	694	ProSitePatterns	Protein kinases ATP-binding region signature.	370	393	IPR017441	GO:0005524
	Seca8g01212	694	Pfam	Protein kinase domain	365	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g01212	694	Gene3D	Phosphorylase Kinase; domain 1	327	439	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g01212	Seca-Chr8	18768153	18770520	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g01212	18	676	Receptor kinase-like Gene Family	AT3G53380	72.280	0.0	949

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca8g01212		Pkinase	1.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g01212	-		-	gmx:100793157	1110.9