Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01198 ATGACCTTAGAAGGGATTTTCATTGAGCCAACTTCAACTACTCCTAATGCTCCTGATCTTTCTCTTCACATAAGCCCTCCAAGCATCTCCTCTTCTTTAGTTGGCACCAATTATGATCAATCTCATGGTTCAGCCCCTTCCAGAACTGTCTCTCAAGCCCACACAGAGCTTTCTCTTGGAAGGAATTTCAGTGGTGGAGGAGAGCAAACACCACACAACAACATCAACAACAACAACTCTTATCATCAAAGCCAAACCCATCATAATTTCCCTCATATTCTTCACTATCACACCAACAACATCACTCCACTGAGTCACAAAAACTATGGAGTTTCATCAGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTCCATTCCCTTACTTGCCTATGGACCATTTAAGAGACAAGGATCATCATCAAAACCAACACAAGATGTACTTATATCATCATCATCATCACATGCCTTCTTCTTCTTCTTCCTCCTCATCATCTTTACCCTATAACTTGGGTGCTATAGATCCCATGTCCTTAAGGGTAGCCACTGGAACAAGGTTGAATGGGTTTTCATCAGCTGAAGCTTTAATCAAATCTCATCCATTGCACCACCAATCACAATATGGGGTTGGTCCTTCTGAGGCGTCTTCAATGAGATCAAGGTTTTTGCCTAAACTTCCAACAAAGAGAAGCATGAGAGCACCAAGAATGAGATGGACAAGCACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCTGCTTCTTCAGGCCAATCAGATGGATCAGGAGAAGATGAATTGTCACCTATGGGAAGCAATGTTGAGCGTGGCGGTTTAAATTTGCATCAATCCACAGAGCAGCACAGAGGTAGATCAAATAATGATGGAGCAATACAACAAGAAATAATGGAATACTCTCCAACCACCTCTACTACTCTATGGACTAACTCTTCAAGTTGTGGAGAGCCATGGCGACGAACTACTTCTAACGACATAGATGGTCTAAGACTACCTATCCTCCATTCACAAATAATATCTGGAGGACACCAAATTCAGAGAGTACTAACAAATAACCCTGCAGGAGCGTGA 1227 0.4295 MTLEGIFIEPTSTTPNAPDLSLHISPPSISSSLVGTNYDQSHGSAPSRTVSQAHTELSLGRNFSGGGEQTPHNNINNNNSYHQSQTHHNFPHILHYHTNNITPLSHKNYGVSSDGLRPIKGIPVYHNRPFPYLPMDHLRDKDHHQNQHKMYLYHHHHHMPSSSSSSSSSLPYNLGAIDPMSLRVATGTRLNGFSSAEALIKSHPLHHQSQYGVGPSEASSMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDELSPMGSNVERGGLNLHQSTEQHRGRSNNDGAIQQEIMEYSPTTSTTLWTNSSSCGEPWRRTTSNDIDGLRLPILHSQIISGGHQIQRVLTNNPAGA. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01198 408 Gene3D - 237 294 - -
Seca8g01198 408 MobiDBLite consensus disorder prediction 59 85 - -
Seca8g01198 408 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Seca8g01198 408 MobiDBLite consensus disorder prediction 33 52 - -
Seca8g01198 408 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 371 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca8g01198 408 FunFam Myb family transcription factor 236 294 - -
Seca8g01198 408 MobiDBLite consensus disorder prediction 293 324 - -
Seca8g01198 408 NCBIfam myb-like DNA-binding domain, SHAQKYF class 238 291 IPR006447 GO:0003677
Seca8g01198 408 MobiDBLite consensus disorder prediction 293 312 - -
Seca8g01198 408 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01198 Seca-Chr8 18504274 18512730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01198 1 381 G2-like Transcription Factor Family AT5G16560 42.822 4.81e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g01198 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01198 - - gmx:100812229 424.861