Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01192 ATGAAACCAAACATTGATCTTGAAGTGGAAGCCTGTGCAGAATATGAATCTGATGTTACCAGCCAGGTTGCTTCCAATATATCTATTCAAGAAACCTCTGCAGGTCCTTGTAGTGACAGCCTCACTAACTCTTCCAACATCACAAATCCATCAGGGACAAATCCTAATTCAGATGATATTTCACTTGACTTAACTCTCAACCTCAACAACAATGAGTTAGGTGCAAGAGACTCAATAGGATTCTCATTCTCAAGCACTTGTGAGAGCAGCAATGAACCTGCCTCTCAAACTACAGCAGCAACCATTCCAAGAGTTTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGAACACTAGCAAAAAGGGCTATGAGAATGGGGTTTTTTACTGAAAGGTATGCAAGTCTAGCATCTCTCCCTTTACATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCCTCACTGCACAATGGTTTTTCACCAACAATGAGGCCTCCTGAGGTGAAAAGCAATGCAAGATTTGAACAAGGATATCTTGGTCTTCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCAGGAAGTTTTCGTCAAGTTGGAGAGGCAGATGATAGCCATCAGAATTTCATACTGAGTGGAAGTTCAGATTTGAGTTTTACTGAGGTGAATCCACCTGTAGAGATAGAGAACTCAACACCAGATTTGACACTGAAACTTTGA 774 0.4186 MKPNIDLEVEACAEYESDVTSQVASNISIQETSAGPCSDSLTNSSNITNPSGTNPNSDDISLDLTLNLNNNELGARDSIGFSFSSTCESSNEPASQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFTERYASLASLPLHGSFRSLGIKAHSSLHNGFSPTMRPPEVKSNARFEQGYLGLPIFLEDDESDLLWPGSFRQVGEADDSHQNFILSGSSDLSFTEVNPPVEIENSTPDLTLKL. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01192 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 48 183 IPR044246 GO:0009788
Seca8g01192 257 Gene3D Classic Zinc Finger 84 150 - -
Seca8g01192 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Seca8g01192 257 MobiDBLite consensus disorder prediction 32 58 - -
Seca8g01192 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Seca8g01192 257 FunFam Zinc finger protein 2 83 152 - -
Seca8g01192 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01192 Seca-Chr8 18460051 18460824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01192 88 257 C2H2 Transcription Factor Family AT1G66140 51.531 8.02e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g01192 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01192 - - gmx:100794851 447.203