Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01189 ATGGCAAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCAAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGCTAATGTTGCTCTCATTGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAATGTCGATACGGTTATCAATCGCTATCTGACGCGGGTCCCACCGCAAAACTCGGGCACCATGCAGTTCATTGAGGCTCACCGCAGTGCCAACGTGTGTGAGTTGAACGCGCAACTGGCTCATATCAATAACCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGTGGAAAGCAGCGCAGGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATGAATAGAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTAGCTATTGTGACAGGCTCCTCATTCAAGGTGCTGCTTCTGCTACTGCCACCAACCCAACTCATCATCATCCTATTTTTACTGTTGCACCACCTGCTGGCTCCTTTTCCAACCTCCCTCTCCTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCGCAGTTCTTTCAGAACCCTATGTTGCAGAATCATTTGTTTGATCATGGGAGCTTGATGCACCACCATGGATTTAACAACTTGGTAGGGTATGGAACTCCTAGATTCTTCTGA 759 0.4875 MANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGANVALIVFSPGEKVFSFGHPNVDTVINRYLTRVPPQNSGTMQFIEAHRSANVCELNAQLAHINNQLESERKHGDELNRMWKAAQAQFWWAYPIEEMNRVQLEQFKLALEELKKHVTSYCDRLLIQGAASATATNPTHHHPIFTVAPPAGSFSNLPLLQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHHGFNNLVGYGTPRFF. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01189 252 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Seca8g01189 252 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Seca8g01189 252 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Seca8g01189 252 PANTHER MADS BOX PROTEIN 11 164 - -
Seca8g01189 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Seca8g01189 252 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Seca8g01189 252 Gene3D - 89 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01189 Seca-Chr8 18258485 18259243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01189 5 171 Type I MADS-box Gene Family AT5G60440 58.235 1.37e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g01189 SRF-TF 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01189 - - gmx:100780445 284.263