Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01188 ATGAAGCTGAAGAACCCGACCCACCTCATAAAGCCCCAAACTTTGGCCATTTTCCTATCTGGGTTCTTCTACGTCGTCGTTTTCGTAACCTCTCAAGACGATGCTTCAGTAATGTTAGCTCTGAAAAACAACCTGAACCCACCCGAGTCATTCGGGTGGTCCGACCCGGACCCCTGCAAATGGAAACACGTGTCCTGCTCCGATGACAAACGGGTGACCCGGATCCAAATCGGGCGCCAAAACCTCCATGGCACTCTCCCTGATAGTCTTCAGAAGCTTTCGGAGTTGCAGCACTTGGAGCTCCAATTCAACAACTTCTCGGGTCCCCTTCCAACCCTTAACGGGTTAAGCTCCCTGCAAGTTTTGATGGCTAGTAACAACCGCTTCACCGCCATCCCCGCCGACTTCTTCGCCGGAATGTCGCAGCTCATCTCCGTGGAGATCGACAACAACCCCTTTGAGCCTTGGGAGATTCCTCAGTCTCTTCGAAACGCTTCAGCGCTTCAGAACTTCTCTGCAAACTCTGCTAATATCAAAGGTAAGGTACCTGATTTCTTTGGTGCTGACGTGTTCCCTGGCTTGACCCTTTTGCATTTAGCCTTAAACAACCTTGAGGGTGGGTTGCCTTCAAGCTTTTCTGGGTCACAGATTGAGTCTTTGTGGTTGAATGGCCAGAAGAGTGATGGTAAGCTTGGTGGGACTGTTGATGTTTTGCAGAACATGACTTCTTTGACACAGGTTTGGTTGCACTCCAATGCTTTTACTGGTCCTTTGCCAGACTTTTCAGGGTTGAAAAGTTTGGAGGATTTGAGCTTGAGGGATAACTCCTTCACTGGTCCTGTTCCAAGTTCATTGGTGAGCCTTAAGTCGCTCAAAGTTGTGAACTTGACTAATAACATGTTTCAGGGTCCAATGCCAGTGTTTGGGAATGGGGTTCAGGTGGATAATACTAAGGATTCCAATAGCTTTTGCTTGCCCAGTCCTGGTGATTGTGATCCTAGGGTTCAGGTTCTTCTTTCAGTTGTTGAGGTTTTGGGTTATCCTAAGAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCTTGTGTTAATTGGATTGGGATTACTTGTAGTGATGGGAACATTACTGTTGTCAATTTTCAGAAGATGGGTCTTAGTGGTATGATATCTCCTGAGTTTGCCAAGCTCAAATCACTGCAAAGACTCCTGCTTGCTGATAATAATCTCACTGGTCCAATTCCTGAGGAGCTTACTGCTTTGCCTGTGCTTACTCAATTGAATGTTGCAAACAATCAGCTCTATGGAAAAATACCAAGTTTTAGGAGCAATGTAATTGTCAGCACAAGTGGTAACAATGATATAGGGAAGGATAAAAGCAGCCAGTCCCATGGTGGTAAAAAGTCATCTTCCCATGTAGGAGTGATTGTGATTGCTGTGATTGGGGCTGTATTTGTGGTTTCATTGATTGGTTTTGTGGTTTTCTGCTTGCTAAGGATGAGGCAAAACAAGTTAAGCAGGGTCCAGAGCCCAAATGCTCTAGTTATTCACCCTCGGCATTCTGGCTCAGATAATGATAGTGTGAAGATAACAGTTGCAGGTTCAAGTACTGTACCGAGCAGTGAGGCAGGAGATATTCAAATGGTTGAAGCAGGAAACATGGTCATTTCTATTCAAGTCCTGAAGAATGTCACTAACAATTTCAGTGAGAAAAACATATTGGGACAAGGAGGCTTTGGAACAGTTTATAAAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAATCTGGGGCAATAACTGGGAAGGGTGCAGGAGAATTTAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGTCACAGGCATCTTGTTGCTCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACCCTAAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGACTGGAACCACTGGAGTGGAATAGAAGATTGACCATTGCCTTAGATGTCGCAAGGGGTGTTGAGTACCTCCATAGCTTGGCCCATCAAAGCTTCATACACAGAGACTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTAGTGCGACTTGCTCCAGAAGGAAAAGCTTCTATTGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGATGTATTCAGCTTTGGAGTAATACTGATGGAGCTGATAACTGGAAGAAAAGCACTTGATGAGACCCAACCTGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTACCTAAATAAGGACTCATTCCGCAAGGCCATTGACCCCACAATTGAGATCAATGAGGAAACACTTGCTAGCATTCACACTGTAGCAGAGTTAGCTGGCCACTGCTGTGCAAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTGGAACTGTGGAAACCAACTGATCAGAACTCTGAAGATATATATGGTATTGACCTTGACATGTCTTTACCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTGCAAGTCATATGGAATCATCATCTTCTTCACTTCTTCCAAGCTTGGATAACACACAGACAAGTATACCTACGCGGCCGTATGGATTCGCTGATTCTTTCACATCTGCAGATGGTAGGTGA 2760 0.4507 MKLKNPTHLIKPQTLAIFLSGFFYVVVFVTSQDDASVMLALKNNLNPPESFGWSDPDPCKWKHVSCSDDKRVTRIQIGRQNLHGTLPDSLQKLSELQHLELQFNNFSGPLPTLNGLSSLQVLMASNNRFTAIPADFFAGMSQLISVEIDNNPFEPWEIPQSLRNASALQNFSANSANIKGKVPDFFGADVFPGLTLLHLALNNLEGGLPSSFSGSQIESLWLNGQKSDGKLGGTVDVLQNMTSLTQVWLHSNAFTGPLPDFSGLKSLEDLSLRDNSFTGPVPSSLVSLKSLKVVNLTNNMFQGPMPVFGNGVQVDNTKDSNSFCLPSPGDCDPRVQVLLSVVEVLGYPKRFAESWKGNDPCVNWIGITCSDGNITVVNFQKMGLSGMISPEFAKLKSLQRLLLADNNLTGPIPEELTALPVLTQLNVANNQLYGKIPSFRSNVIVSTSGNNDIGKDKSSQSHGGKKSSSHVGVIVIAVIGAVFVVSLIGFVVFCLLRMRQNKLSRVQSPNALVIHPRHSGSDNDSVKITVAGSSTVPSSEAGDIQMVEAGNMVISIQVLKNVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMESGAITGKGAGEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMYLNKDSFRKAIDPTIEINEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPTDQNSEDIYGIDLDMSLPQALKKWQAYEGASHMESSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01188 919 PANTHER OSJNBA0070M12.3 PROTEIN 17 919 - -
Seca8g01188 919 SUPERFAMILY L domain-like 58 441 - -
Seca8g01188 919 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Seca8g01188 919 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Seca8g01188 919 Gene3D Ribonuclease Inhibitor 31 331 IPR032675 -
Seca8g01188 919 CDD STKc_IRAK 572 845 - -
Seca8g01188 919 FunFam Receptor-like kinase TMK4 32 329 - -
Seca8g01188 919 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Seca8g01188 919 Pfam Protein kinase domain 567 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01188 919 SUPERFAMILY Protein kinase-like (PK-like) 543 850 IPR011009 -
Seca8g01188 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Seca8g01188 919 SMART LRR_typ_2 116 139 IPR003591 -
Seca8g01188 919 SMART LRR_typ_2 395 419 IPR003591 -
Seca8g01188 919 SMART LRR_typ_2 264 288 IPR003591 -
Seca8g01188 919 SMART LRR_typ_2 191 214 IPR003591 -
Seca8g01188 919 MobiDBLite consensus disorder prediction 886 919 - -
Seca8g01188 919 FunFam receptor protein kinase TMK1 528 643 - -
Seca8g01188 919 Gene3D Transferase(Phosphotransferase) domain 1 644 864 - -
Seca8g01188 919 MobiDBLite consensus disorder prediction 886 908 - -
Seca8g01188 919 FunFam receptor protein kinase TMK1 644 861 - -
Seca8g01188 919 SMART serkin_6 566 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01188 919 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Seca8g01188 919 ProSiteProfiles Protein kinase domain profile. 566 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01188 919 FunFam Leucine-rich repeat receptor-like kinase 333 456 - -
Seca8g01188 919 Gene3D Phosphorylase Kinase; domain 1 527 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01188 Seca-Chr8 18106766 18110375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01188 71 854 Receptor kinase-like Gene Family AT5G65700 32.218 2.97e-87 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca8g01188 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01188 K00924 - gmx:100789646 1482.23