Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01187 ATGGTTTTGTCATGGACAAGAGGGAGAGTTTTTCGCCGTGCCCGCAAAGGGAAAGAGCTGAATAATTGTGGCGATTTGGAGGTGGAGATTGCTATTCCCACCCATTTTCGTTGCCCTGTGAGTTTAGACTTGATGAAAGACCCTGTCACACTTTCCACAGGGATCACCTACGACAGGGACAGCATCGAGAAATGGGTTGAAGCAGGGAACCACACGTGCCCTGTTACCAAAAGGGAGTTAACAACTTTTGATATGATCCCAAATCACGCAATTCGAAGGATGATTCAGGATTGGTGTGTTGAGAATCGTTCTTTTGGGATTGAAAGGATCCCAACTCCTCGTATTCCTGTTACCCCTTACGAGGTTTCAGACACTTGTTCCAGGATCCTCTCTGCTTCACAACATGGGGATGATCAAAAAGTTCTTGAATTGGTGAGAAAGATCAAATCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTTTCCAATGGTTCTGCTCCTCTTGTTCTTGTTAGTGCTTTTGATTCTTTCTCACGTGGGTCTCTTGAGAAAAACGTGGTTGTTTTGGAGGAGATCTTAGGGGTTTTGACTTGGATGCGTCCTATTGTTGAAGAGGGTAGATCTGTTTTAGGGTCTTTGCCTTCTTTGAATTGCATGGTTTGGTTCTTAAATGATAAACAACTTTCCACAAGACAGAATGCAGCTTTGTTGCTCAAGGAAATGCCTGTTGAGGCATTGGCTAAAACTGAAGGGATTGTTGAGTCTTTGGTTAAGATGATTAGGGAGCCTATTGGGCCTGCTGCTACCAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTCCTCATCAGAGAACAAAAGGGTAATCTCAGTGAGATTTGTGGAATTGGGTTTGGTTTCACTCTTGTTGGAGACCCTTGTTGATGCTGAAAGAGGGATCTGTGAGAAGGCTTTAGGGGTGTTGAATTCAATTTGTGATTGCAAAGAAGGAAAAGATGCAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAATTGAGTTCTAGTTTTGCAGTTTCTATTCTTTGGAAGCTTTGTGATAAGGCTGAGGAAGGGGTGTTAATTGAGGCACTTCAAGTTGGGGTGTTTCAGAAACTCCTTGTTCTTCTTCAAGTGGGTTGTGGGGAGAGTACAAAGGAAAAGGCTACTGAGTTGTTGAGATTATTGAATGGTTATAGGAGCAAAGCAGAGTGTGTTACCGTTGATTCATCATTGGATTTCAAGCACCTTAAGAAGCCCTTCTAA 1314 0.4292 MVLSWTRGRVFRRARKGKELNNCGDLEVEIAIPTHFRCPVSLDLMKDPVTLSTGITYDRDSIEKWVEAGNHTCPVTKRELTTFDMIPNHAIRRMIQDWCVENRSFGIERIPTPRIPVTPYEVSDTCSRILSASQHGDDQKVLELVRKIKSWGKESERNKRCIVSNGSAPLVLVSAFDSFSRGSLEKNVVVLEEILGVLTWMRPIVEEGRSVLGSLPSLNCMVWFLNDKQLSTRQNAALLLKEMPVEALAKTEGIVESLVKMIREPIGPAATKACLSTIFHLVSSSENKRVISVRFVELGLVSLLLETLVDAERGICEKALGVLNSICDCKEGKDAAKSNALTLPLVIKKLLRVSELSSSFAVSILWKLCDKAEEGVLIEALQVGVFQKLLVLLQVGCGESTKEKATELLRLLNGYRSKAECVTVDSSLDFKHLKKPF. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01187 437 Gene3D - 121 420 IPR011989 -
Seca8g01187 437 CDD RING-Ubox_PUB 33 85 IPR045210 -
Seca8g01187 437 SUPERFAMILY ARM repeat 123 412 IPR016024 -
Seca8g01187 437 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Seca8g01187 437 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Seca8g01187 437 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Seca8g01187 437 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Seca8g01187 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 105 IPR013083 -
Seca8g01187 437 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Seca8g01187 437 SUPERFAMILY RING/U-box 28 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01187 Seca-Chr8 18065790 18067103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01187 27 437 U-box Gene Family AT5G37490 47.368 2.90e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01187 - - gmx:100790182 666.381