Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01184 ATGCCAAGTTGGATTGAGGCATTTCTGGAAAATACTTTCTTTAACAAATGTCCTTCTCATCCAATTCGTAGGAATGAGTTAAATAAATATTGTATTAACTGCGATATTTTAGCTTGTCAATATTGTGTATCATCAGGTTCTCATCGCCATCACAAGATGCTTAAAATTTATAGACATGTTTACAAAGCTGTTGTCTCCCTTTCTGCTATGGAAAAGTATGTTCATTGCTCGCATATCCAGCCCTACAAGTGCAACAAGCGACGGGTTATTTCTCTGAATCCTCTCCCCCATTGTGGTTCAACATTAAATAATGAGGCATCATGCAATATCTGCAATAGAAAGTTAACTGAACCTAATTTATACCGCTACTGCTCTATTTCTTGCAAGATTTTGAACTTTCAGGTCAAAGCTGTTTCAGGAGAGCCTAATGATTCAATTCCTCCTTCCATTTCTATCCAGAGTCCTCCTCCACCTCCTGAGGAAAGTCAGGAGGAAACTTCTGAACCCCCAAAGTGGAAAAAGAGTAGAAAGGGAACACCCCACAGAGCTCCCTTCTTCTAA 561 0.3939 MPSWIEAFLENTFFNKCPSHPIRRNELNKYCINCDILACQYCVSSGSHRHHKMLKIYRHVYKAVVSLSAMEKYVHCSHIQPYKCNKRRVISLNPLPHCGSTLNNEASCNICNRKLTEPNLYRYCSISCKILNFQVKAVSGEPNDSIPPSISIQSPPPPPEESQEETSEPPKWKKSRKGTPHRAPFF. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01184 186 ProSiteProfiles Zinc finger B-box type profile. 17 56 IPR000315 GO:0008270
Seca8g01184 186 Pfam PLATZ transcription factor 58 130 IPR006734 -
Seca8g01184 186 Pfam B-box zinc finger 15 56 IPR000315 GO:0008270
Seca8g01184 186 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 185 - -
Seca8g01184 186 MobiDBLite consensus disorder prediction 141 186 - -
Seca8g01184 186 MobiDBLite consensus disorder prediction 149 163 - -
Seca8g01184 186 CDD Bbox2 16 56 - -
Seca8g01184 186 Gene3D Classic Zinc Finger 11 56 - -
Seca8g01184 186 SUPERFAMILY B-box zinc-binding domain 14 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01184 Seca-Chr8 17870729 17872244 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca8g01184 PLATZ 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01184 - - tcc:18601328 234.572