Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01183 ATGTATTGGTTTTTGTTTTTGTTAAAGGAGGATGAGCAAGTGGCCCAATCTGAAGTCCACATGCCAAGTTGGATTAAGGCATTTCTGGAAAATACTTTCTTTAACAAATGTCCTTCTCATCCAATTCGTAGGAATGAGTTAAATAAATATTGTATTAACTGTGATATGTCAGCTTGCCAATATTGTGTATCATCAGGTTCTCATCGCCATCACAAGATGCTTAAAATTTATAGGCATGTTTACAAAGATGTTGTCTCCCTTTCTGCTATGGAAAAGTATGTTCATTGCTCGCATATCCAGCCCTACAAGTGTAACAAGCGACAGGTTATTTCTCTGAATCCTCTCCCCCATTGTTGTTCAACATTAAATAATGAGGCATCGTGCAACATCTGCAATAGAAAGTTGACTGAACCTAATTTATACCTCTACTGCTCTATTTCTTGCAAGGTCAAAGCTATTTCAGGAGAGCGTGATGATTCAATTCCTCCTTCCATTTCCATCCAGAGTCATCCTCCTCCTCCTCCTGTTGCTGCTGCTGCTGAGGAAAATCAGGAGGAAACTTCTGAACCCCCAAAGCGGAAAAAGAGTAGAAAGGGAACACCCCACAGAGCTCCCTTCTTCTAA 624 0.4038 MYWFLFLLKEDEQVAQSEVHMPSWIKAFLENTFFNKCPSHPIRRNELNKYCINCDMSACQYCVSSGSHRHHKMLKIYRHVYKDVVSLSAMEKYVHCSHIQPYKCNKRQVISLNPLPHCCSTLNNEASCNICNRKLTEPNLYLYCSISCKVKAISGERDDSIPPSISIQSHPPPPPVAAAAEENQEETSEPPKRKKSRKGTPHRAPFF. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01183 207 ProSiteProfiles Zinc finger B-box type profile. 37 76 IPR000315 GO:0008270
Seca8g01183 207 SUPERFAMILY B-box zinc-binding domain 34 79 - -
Seca8g01183 207 Gene3D Classic Zinc Finger 30 97 - -
Seca8g01183 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 15 206 - -
Seca8g01183 207 Pfam PLATZ transcription factor 78 150 IPR006734 -
Seca8g01183 207 CDD Bbox2 36 76 - -
Seca8g01183 207 MobiDBLite consensus disorder prediction 159 207 - -
Seca8g01183 207 Pfam B-box zinc finger 35 76 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01183 Seca-Chr8 17842281 17844087 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca8g01183 PLATZ 8.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01183 - - tcc:18601328 238.424