Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01182 ATGCCAAGTTGGATTAAGGCATTTCTGGAAAATACTTTCTTTAACAAATGTCCTTCTCATCCAATTCGTAGGAATGAGTTAAATAAATATTGTATTAACTGTGATATGTCAGCTTGCCAATATTGTGTATCATCAGGTTCTCATCGCCATCACAAGATGCTTAAAATTTATAGGCATGTTTACAAAGATGTTGTCTCCCTTTCTGCTATGGAAAAGTATGTTGATTGCTCTCATATCCAGCCCTACAAGTGTAACAAGCGACAGGTCAAAGCTATTTCAGGAGAGCGTGATGATTCAATTCCTCCTTCCATTTCCATCCAGAGTCATCCTCCTCCTCCTCCTGTTGCTGCTGCTGCTGAGGAAAATCAGGAGGAAACTTCTGAACCCCCAAAGCGGAAAAAGAGTAAAAAGGGAACACCCCACAGAGCTCCCTTCTTCTAA 441 0.4082 MPSWIKAFLENTFFNKCPSHPIRRNELNKYCINCDMSACQYCVSSGSHRHHKMLKIYRHVYKDVVSLSAMEKYVDCSHIQPYKCNKRQVKAISGERDDSIPPSISIQSHPPPPPVAAAAEENQEETSEPPKRKKSKKGTPHRAPFF. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01182 146 Pfam PLATZ transcription factor 58 92 IPR006734 -
Seca8g01182 146 Gene3D Classic Zinc Finger 10 77 - -
Seca8g01182 146 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 89 - -
Seca8g01182 146 ProSiteProfiles Zinc finger B-box type profile. 17 56 IPR000315 GO:0008270
Seca8g01182 146 MobiDBLite consensus disorder prediction 91 146 - -
Seca8g01182 146 CDD Bbox2 16 56 - -
Seca8g01182 146 Pfam B-box zinc finger 15 56 IPR000315 GO:0008270
Seca8g01182 146 SUPERFAMILY B-box zinc-binding domain 14 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01182 Seca-Chr8 17837588 17839121 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca8g01182 PLATZ 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01182 - - rcu:8280450 158.303