Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01181 ATGGCGAGTTCTTCTTCCTCGAGAAAAATGAACAAGGATGAGCAAGTGGCCCAATCTGAAGTCCACATGCCAAGTTGGATTAAGGCATTTCTGGAAAATACTTTCTTTAACAAATGTCCTTCTCATCCAATTCGTAGGAATGAGTTAAATAAATATTGTATTAACTGTGATATGTCAGCTTGCCAATATTGTGTATCATCAGGTTCTCATCGCCATCACAAGATGCTTAAAATTTATAGGCATGTTTACAAAGATGTTGTCTCCCTTTCTGCTATGGAAAAGTATGTTGATTGCTCGCATATCCAGCCCTACAAGTGTAACAAGCGACAGGTTATTTCTCTGAATCCTCTCCCCCATTGTGGTTCAACATTAAATAATGAGGCATCGTGCAACATCTGCAATAGAAAGTTGACTGAACCTAATTTATACCACTACTGCTCTATTTCTTGCAAGGTCAAAGCTATTTCAGGAGAGCGTGATGATTCAATTCCTCCTTCCATTTCCATCCAGAGTCATCCTCCTCCTCCTCCTGTTGTTGCTGCTGCTGAGGAAAATCAGGAGGAAACTTCTGAACCCCCAAAGCGGAAAAAGAGTAGAAAGGGAACACCCCACAGAGCTCCCTTCTTCTAA 630 0.4111 MASSSSSRKMNKDEQVAQSEVHMPSWIKAFLENTFFNKCPSHPIRRNELNKYCINCDMSACQYCVSSGSHRHHKMLKIYRHVYKDVVSLSAMEKYVDCSHIQPYKCNKRQVISLNPLPHCGSTLNNEASCNICNRKLTEPNLYHYCSISCKVKAISGERDDSIPPSISIQSHPPPPPVVAAAEENQEETSEPPKRKKSRKGTPHRAPFF. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01181 209 Pfam PLATZ transcription factor 80 152 IPR006734 -
Seca8g01181 209 ProSiteProfiles Zinc finger B-box type profile. 39 78 IPR000315 GO:0008270
Seca8g01181 209 SUPERFAMILY B-box zinc-binding domain 36 81 - -
Seca8g01181 209 CDD Bbox2 38 78 - -
Seca8g01181 209 Gene3D Classic Zinc Finger 33 78 - -
Seca8g01181 209 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 17 208 - -
Seca8g01181 209 MobiDBLite consensus disorder prediction 161 209 - -
Seca8g01181 209 Pfam B-box zinc finger 37 78 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01181 Seca-Chr8 17832895 17836009 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca8g01181 PLATZ 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01181 - - tcc:18601328 248.44