Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01180 ATGTCTTTCTCTCTCATCGACGCCTGTAAGAAGAGAAAACGATGGCCCAAGATTTTCAGGTTGCACTCTTTCGCTGACCCTGGTTGCCCCATTGCACCTTCGGGTCCTTTCCGTGACAATATTCGGTTCTTTCTTCAAGAAGCTGGAGAACTCGAAGATTACACTGTCTTGGGTAATCCCCTTTGGTGCACCCTTCTCATCCACGACAAGACCAACCTAATGGCTCCTTTCTACACCCTCGAAGAGGACGTTTACCATTCTTCTCATCCCTTCTGTGACCATTGCCGCTGTGTAGGTTGGAGTGGCCATTATGTAACTAAAAGAAGGTACCATTTCATAATCCCAATGGACAATGGATGGCATAAACCCTTAGGTGAAGGTGCACTTGAAAATCAGAGTCATCTTTTGCATGGGGTAATTCATTGCAATGGGTATGGCCATTTGCTCTGTCTTAATGGGATTGAAGGGGGTTCCAAAGTTCTCAGTGGAAGAGAGATCATGGATCTATGGGACAGGATCTGCACCAACCTTCGAGCAAGGAAAATTGCGGTGGAAGATGCTTCAAGGAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGACACTCTTGGTTTGGTAGATGGGGCTATAGATTTTGTCGTGGAAGCTTTGGAGTGACAGAGCAAAACTACTATGAAGCAATTGAAACTCTTGGTTCTTTGGAGCTCAATGAGATTGTAAGAGATTTAAGTAAGACAAAGTACTACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAAACACAGATTATCACAATCAGGGATCTTCTCAGATTTATGCTTACTGTCAAGTCTCGTGCTCCTGTATCTAAGATTACAATCACTTCTTCTGCTGCTGCTGCTGCTTCTTCTCCTTCTTCTACTCCAGCATTCATCTCAAGAAATTCAACCAAACATGCATTTTCAAACAGATTAAATCCCATGAAGGAAAAATCTGCAAGGTATAAGAAGTTCAGCAATGCAGTTGCTAATATGGATAGTAGGTGGCCTACAAGGAGATTAGAGTTTGCAGCTCAAGTGATTGTAGATGCATTGAAAGAGGACAAGGCTATCAAATCAGATTCTGGTGGAATGACAAGGCAAGATGTAAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTGCTTGATTATGTGCTGAAATCTCTGAACAATGTGATTGTTGGGAATTATGTTGTGCGCCGCATGGTGAATCCATCAACTAGGATCCTGGAATATACTATTCATGAGCTTGGCAAAGGGTTCAAATCCCCTGAAATGGATCCTGGGGTAATGCCTATTGTAGAATCCCAAGTGGAGTCATCTTGGGTGCCTGGTAATGATGTTTACAGTGATGTATTTTATCTGTACAAGAATGTGCTATTGAGTTATCCAGATTCAGAGCCAGTGGACTTGGCAGTTCAGACAATTCTGGATAGCAGACACTTTGTGAAGGTTTGGGCATTAAGGGATGAAATGGAGCAAGTTTTGACATTCATTTGCCGCCTGAAACCAAATTTTGTTGACAATAAGTCTGAGTTGAAAGGGCCACCTTGTTGTGGTGAGATTGTAGTGGTTCCACTGCATGCAACTGTTGGAGACTTGAAGCAAGCTGCTGAGGCTGCTTTGAGGGATACTTATTGCATTGCAGAAAGACTGATAGTAACAGACATCACAGAATTGATGGGAGTGAGTGATGAGGAAGTGCTTTTTGGACTAATACAGTCAGGTGTGGAACTTTGTGTGAGGGGAATTGCTATAGATTTGTGTACTCCATTGAAGTATCAAGGAGGGTCTGATAACTGGAAGGTGAGATGTGAGTGTGGAGCTCAGGATGATGATGGGGAGAGAATGGTGTCTTGTGACATTTGTGAGGTGTGGCAGCATACACGATGTTGTGGCATAGATGATTCTGAGACAGTGCCACCATTGTTTGTGTGCTCTGGGTGCTGTGATTCACTTGTACCTCCAAGGATTGAATCTAGCTATAGTATGGATTGTGCTGATGATTTTCTGATTTCAGCAGAGCCTACCAACTTGCTGGAGTATGGGTATGGGTATTGA 2106 0.4326 MSFSLIDACKKRKRWPKIFRLHSFADPGCPIAPSGPFRDNIRFFLQEAGELEDYTVLGNPLWCTLLIHDKTNLMAPFYTLEEDVYHSSHPFCDHCRCVGWSGHYVTKRRYHFIIPMDNGWHKPLGEGALENQSHLLHGVIHCNGYGHLLCLNGIEGGSKVLSGREIMDLWDRICTNLRARKIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEQNYYEAIETLGSLELNEIVRDLSKTKYYKEIKQMIRCYRDMSETQIITIRDLLRFMLTVKSRAPVSKITITSSAAAAASSPSSTPAFISRNSTKHAFSNRLNPMKEKSARYKKFSNAVANMDSRWPTRRLEFAAQVIVDALKEDKAIKSDSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHELGKGFKSPEMDPGVMPIVESQVESSWVPGNDVYSDVFYLYKNVLLSYPDSEPVDLAVQTILDSRHFVKVWALRDEMEQVLTFICRLKPNFVDNKSELKGPPCCGEIVVVPLHATVGDLKQAAEAALRDTYCIAERLIVTDITELMGVSDEEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVSCDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESSYSMDCADDFLISAEPTNLLEYGYGY. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01180 701 ProSitePatterns Zinc finger PHD-type signature. 620 664 IPR019786 -
Seca8g01180 701 SUPERFAMILY FYVE/PHD zinc finger 612 671 IPR011011 -
Seca8g01180 701 SMART PHD_3 619 665 IPR001965 -
Seca8g01180 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 668 IPR013083 -
Seca8g01180 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 673 - -
Seca8g01180 701 CDD PHD_MMD1_like 620 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01180 Seca-Chr8 17720067 17722665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01180 10 670 PHD Transcription Factor Family AT5G22260 34.415 2.40e-123 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01180 K26271 - gmx:100797388 1124.77