Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01177 ATGAAGCTCAAATTCCAATTGTTGGTTCTGTGTTTCTCTACCTTATTAGTATTAAATGATGCTTCTACTATGGTCTCAGATGGGGTGACTTTGTTGTCACTCCTGAGGCACTGGACCTTTGTGCCTCCTTCCATAAAATCAAGCTGGGAAGCCTCTGATTCCACTCCATGCTCTTGGATAGGAGTCCAGTGCAGCCATGCCTTTAATGTGGTCTCCCTTAACCTAACTTCTCTTGGGATTTTTGGTCAACTGGGACCAGAAATTGGACAATTGCATCACTTGCAGACCATGGTTTTGTTGAATAACAGTTTCTCAGGAAAAATAGGTCCAGAGTTAGGCAATTGTAGTCTGCTTGAGCATTTGGACCTTTCTAAGAACAGTTTTAGTGGAGAAATTCCTAATGAATTAGGAACATTAAGTAAATTAAGGGTCCTTGAATTATCTTTCAACCATTTGATAGGTGAAATTCCAGTCAATGTTTGGAGGATTCAGAGTCTTCAGCACATCCTAGTTCATAATAATAGCCTTATTGGGGAACTACCTTTAGATATGACAGAGCTCAAGCATCTAAGAAATATTTCATTGTATTACAACCAGTTCTCTGGAGTCATACCCCAAAGCTTGGGAATCAATAGCAGTTTAGTGAAGTTGGACTTCATGAGTAATAGGTTCACTGGCAACATCCCACCAAATCTTTGTTATGGAAAGCAATTAAGTGTGCTGAACTTGGGGTTTAATCAACTTCAAGGTGGGGTATCTTCTGATATAGGAAGATGTGCAAGTCTAAGGAGTGAGAACAGAATCACTGGAAAAATTCCACCAAGTTTGGCAAATTGCACAAATCTCACTATGATTATTTTTTCAATGAACAAATTTACTGGGCTCATACCACCAGAGCTTGGAAAGCTTGGGAATCTTTTGATTTTGGATGTTGCTCACAACAACTTGGGTGGTCCTTTGCCATCTCAGCTTTCAAACTGTACTAAAATGGATTACTTTGATGTGGGATTCAATGTGATTAATGGTTCATTTCCTTCTAGTTTGAGGAGCTGGACAGGGCTAACCACTTTAATCTTAGAAGAGAATCATTTTATTGGGGGAGCATTGCATAATCTGATATATGGGTTGAATTTGAGTGCTAATGGATTGACTGGTGAGATTCCTTTAGAAATTGGGAAGCTAATAAAGCTGCAAAGCCTGGATGTATCATTGAACAATTTGACAGGAAGCATAGATGTTCTTGATGAGCTTCTTTCATTAATAGAGGTTAATATTTCCTACAACAACTTCAATGGTTCTGTACCCAAAAACCTGATGAAGTTACTGAACTCCTCACCATCTTCTTTCTTGGGTAATTCTCACATATGTATCAATTGTTCACCTTTAGATGGCTTGAATTGCACTAAAGCTAGCCATTTGGAGCCATGTGCCATTGAATTTATTGATCACAATCACAAAAGAATCAGTAAACTTGTAATTGTGATGATAGAAGTTGGATCCTCAATGTTTGTTTCTGCCATGCTGGTAGTATTAGTTCACATGAATCTCCAAAAAAGATATAAGCAGGAAGTGAATGCTTCAGTTGAAGGGGAAGGACCATTGGCATCATCTTTTATTATTATTGGTAGAGGAGCCAACCAACATATTGGGCAAATAAATAAGCAAGAAGTCATGATCCGCACTGAAAAGCATTTATCTTCCCTTGTTAAGCAAGTGATGAAGGTGACTAACAACCTAAATGATCAGCATATTGTTGGCAGAGGAGCCCATGGAATTGTTTACAAAGTCCAACTAGGTCCAGACCAAGCACTTGCTGCAAAGAAGATTTCATTTTCAACCAACAGAGGGAAGAGCAAACATAAGCTCAAAGAAACTATGGTGAGGGAAGTTCAAATTTCTGGGATGATTGATCATCCAAATTTGGCCTCATACACAGACTATTGGTTTGGGAAGGACTATGGTGTAATCTTGTACAAGTACATGGAAAATGGAAGCCTGCATGATGTTTTACATGATGAAAGGAATCCACCACCATCCTTAAAATGGAATGTCCGGCTTAATATAGCCATTGGAGCTGCAAATGGACTAGCATATCTGCATTATAACTGTCGACCTCCCATAGTACATAGAGACATCAAACCAAAAAATATACTCCTTGACCATAATCTGGAGCCTGTTATCACTGATTTTGGTACTTCCCTGCGAAGGAGATGGCATGAGCACTCTATTTTTCCTGAAAATAGGCAAAGGCTTTCAGCATATATTGCTGGTACCATTGGCTATATTGCACCAGAGAATGCATATGCAATAGTGGTGAGCAGAAAGTCTGATGTTTACAGCTATGGAGTAGTTTTGCTTGAACTAATAACCAGAAAGAAAGTATTAGATCAGTCATTTATGGAGGAGGGAACAAGTTTAGTAAGATGGATTAGATCTGTCTACACAGAACCACAAAAAATTGGAGAGATTGTTGATTCAAGTCTTGCAGGTGAATTTTCCCAATCAATAATAATAATGAAGCAAGTTAGTGCAGTGCTTGACTTGGCTTTGAGATGTACTCAGAGGGATCCAAGAAAGAGGCCAACAATAAGGAAAGTTGTTAGGTTCTTTCAGAACCCCATTTTTCTAAAGCAGAGGCATGAGTATGATGATGAAGCACCACATCCACAGGCACAAGTAGAACCAAGTAAAATAAGTGACTCATACTCCACCAATCCAACTAATAGTAATAGCAAAGTGGCTTCAAAGGAAGAGGTTTCTAACTTTTGGCAAACTACAAACTCACTTGAGGTAAAAAACAACCAACACAAGTCACACATTGCTTGGAGGTTTCCACCAGATGGATGGGTTAAAGTTAACATTCATAGCAATGCAACAGGAGGAATATGTGGAGGAGTCATGCGTGGGGATAGTGGGGAATGGCTACAAGGTTTTACAGTGCGTTTTGCAGCATATAATGAGTCTGATGATGTTGCTGCTGGAATTTGGGGAATATACCATGGAATGAAAATGGCTTGGGATTTTGGGTTTCCAAGAGTTATCATAGAGACAGATAATTTGACAGCAGTGCAGCTACTCTTATATGTACCAACTAACAAGGTATATAAACTTATGTCATATTCATATCCCATTGTTCTTTGTCATGAATTCATTCAGAAAGATTGGGAGGTCAAGGTACAATACATTTTCAGAGAAGGCAACTTGTGTGCTAATTGGCTGGTTAATAGTGTTGATTATTGGGGTGAGGATGTTATTTTAAAAACCCCACCTAAGGAACTTGTTGATATTCTTAATCAGGATGTTTTTGATGCATCAACACCGATGGCTTAG 3330 0.3886 MKLKFQLLVLCFSTLLVLNDASTMVSDGVTLLSLLRHWTFVPPSIKSSWEASDSTPCSWIGVQCSHAFNVVSLNLTSLGIFGQLGPEIGQLHHLQTMVLLNNSFSGKIGPELGNCSLLEHLDLSKNSFSGEIPNELGTLSKLRVLELSFNHLIGEIPVNVWRIQSLQHILVHNNSLIGELPLDMTELKHLRNISLYYNQFSGVIPQSLGINSSLVKLDFMSNRFTGNIPPNLCYGKQLSVLNLGFNQLQGGVSSDIGRCASLRSENRITGKIPPSLANCTNLTMIIFSMNKFTGLIPPELGKLGNLLILDVAHNNLGGPLPSQLSNCTKMDYFDVGFNVINGSFPSSLRSWTGLTTLILEENHFIGGALHNLIYGLNLSANGLTGEIPLEIGKLIKLQSLDVSLNNLTGSIDVLDELLSLIEVNISYNNFNGSVPKNLMKLLNSSPSSFLGNSHICINCSPLDGLNCTKASHLEPCAIEFIDHNHKRISKLVIVMIEVGSSMFVSAMLVVLVHMNLQKRYKQEVNASVEGEGPLASSFIIIGRGANQHIGQINKQEVMIRTEKHLSSLVKQVMKVTNNLNDQHIVGRGAHGIVYKVQLGPDQALAAKKISFSTNRGKSKHKLKETMVREVQISGMIDHPNLASYTDYWFGKDYGVILYKYMENGSLHDVLHDERNPPPSLKWNVRLNIAIGAANGLAYLHYNCRPPIVHRDIKPKNILLDHNLEPVITDFGTSLRRRWHEHSIFPENRQRLSAYIAGTIGYIAPENAYAIVVSRKSDVYSYGVVLLELITRKKVLDQSFMEEGTSLVRWIRSVYTEPQKIGEIVDSSLAGEFSQSIIIMKQVSAVLDLALRCTQRDPRKRPTIRKVVRFFQNPIFLKQRHEYDDEAPHPQAQVEPSKISDSYSTNPTNSNSKVASKEEVSNFWQTTNSLEVKNNQHKSHIAWRFPPDGWVKVNIHSNATGGICGGVMRGDSGEWLQGFTVRFAAYNESDDVAAGIWGIYHGMKMAWDFGFPRVIIETDNLTAVQLLLYVPTNKVYKLMSYSYPIVLCHEFIQKDWEVKVQYIFREGNLCANWLVNSVDYWGEDVILKTPPKELVDILNQDVFDASTPMA. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01177 1109 CDD RNase_H_like 963 1075 IPR044730 -
Seca8g01177 1109 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Seca8g01177 1109 ProSiteProfiles Protein kinase domain profile. 579 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01177 1109 Gene3D Ribonuclease Inhibitor 267 474 IPR032675 -
Seca8g01177 1109 Pfam Reverse transcriptase-like 954 1076 IPR002156 GO:0003676|GO:0004523
Seca8g01177 1109 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 265 471 - -
Seca8g01177 1109 Gene3D Ribonuclease Inhibitor 182 266 IPR032675 -
Seca8g01177 1109 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 55 264 - -
Seca8g01177 1109 Gene3D - 947 1078 IPR036397 GO:0003676
Seca8g01177 1109 Pfam Protein kinase domain 581 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01177 1109 SUPERFAMILY RNI-like 72 461 - -
Seca8g01177 1109 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 99 864 - -
Seca8g01177 1109 Gene3D Transferase(Phosphotransferase) domain 1 661 885 - -
Seca8g01177 1109 ProSiteProfiles Leucine-rich repeat profile. 396 418 IPR001611 GO:0005515
Seca8g01177 1109 ProSitePatterns Protein kinases ATP-binding region signature. 585 608 IPR017441 GO:0005524
Seca8g01177 1109 Gene3D Phosphorylase Kinase; domain 1 541 660 - -
Seca8g01177 1109 SMART serkin_6 579 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01177 1109 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 661 878 - -
Seca8g01177 1109 MobiDBLite consensus disorder prediction 881 917 - -
Seca8g01177 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Seca8g01177 1109 SUPERFAMILY Protein kinase-like (PK-like) 558 869 IPR011009 -
Seca8g01177 1109 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Seca8g01177 1109 MobiDBLite consensus disorder prediction 894 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01177 Seca-Chr8 17709180 17713607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01177 64 868 Receptor kinase-like Gene Family AT1G17750 41.427 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g01177 Pkinase 7.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01177 - - adu:107496784 923.694