Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01176 ATGTGTGAGAAGAAGAAGGTGAAGGTGGTGACGGAGGAAGAGGATGAGAACGGGAAGCAAACGACGTCGTGTTCGAGATCTTCTTCTTCTTCATCTTCTTCGTCTTCGACGGATGATAGAGAGTATGAGGTGCAGGACCTGAGGGATCGGTTGAGATCATCGAGAGGAAGCAGGTTCGATCTGATAGAGAAAGAGTTTGGTCTCAATAACGGTTGGAGGAAGTTCAGTCGCCAAGCCCTCCTACATGAACTCGTTATCTTTCCTGATAACAGGTGGTATCGAGCATGGACAAAATTCATATTGGTATGGGCAGTGTACTCATCCTTCTTCACCCCAATGGAGTTTGCATTTTTTCGTGGCCTGCCAGAGAATCTCTTTGTACTGGATATCATTGGGCAAGTGGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGTATGGTCTACAAGCGAACTCCAATTGCTCTGCGGTATCTAAAATCTAGCTTTATCTTTGACTTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGTTCATGGTTCTTGGTCTAACCACTAGGATGACCTTTTATGAACAGGCTTGTGGACGAAAAGAGGCAGTGCGGTATCTTTTGTGGATTAGATTATATCGGGCGCGGAGAGTCGCAGATTTCTTCCAGAGGTTGGAGAAGGACATACGTGTCAATTACATTGTTACTCGGATTGTGAAACTCATAGTAGTTGAACTCTACTGCACACACACAGCAGCCTGCATTTTCTACTATCTGGCTACTACATTACCTGAATCACAAGAGGGGTACACATGGATAGGAAGTTTAAAACTGGGTGACTTCAGTTATTCACATTTCAGAGAAATTGATCTATGGAAGCGCTACACAACATCTTTGTATTTTGCTATTGTGACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGACATGGTTCTCGGTGCTTATTTGATTGGTAACATGACAGCTCTGATAGTAAAGGGATCAAAGACTGAAAAGTTCAGGGACAAGATGACAGATCTTATGAAATATATGAACAGAAATAGACTTGGAAGGGATATCCGTGAACAAATAAAGGGCCATGTGCGCTTACAGTTTGAGAGCAGTTACACTGACGCTGCCCTCATCCAGGACATTCCCATTTCTATTCGATCTAAGATATCCCAAACATTGTATTTGCCATACATTGAAAAGGTTTCTCTTTTTAAAGGCTGCTCTTCAGAATTCATCAATCAGATTGTTATTAAGCTCCATGAAGAATTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTGTTTCACTTCTACAGCCTAACAGTACATTTGGAGAAATATCCATTCTTTGCAACATTCCTCAGCCATATACTGTTCGTGTCTGTGAACTGTGCAGGGTCCTGCGGCTTGATAAACAATCATTTACAAATATCCTAGAAATATACTTCTATGATGGAAAGAAAGTATTAGACAACCTTCTAGAGGGAAAAGAGTCTCTTCGAGGTAAGCAATTGGAGTCAGACGTCAACTTTCATATTGGAAAGCTAGAAGCTGAACTTGCTTTGAAGGTCAACAGAGCAGCCTTTGATGGGGATCTATATCAGCTTAAGGGTTTGATTCGAGCTGGAGCTGATGCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCGTCTAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACGTCAACATCAAAGATAACTTTGGGAATACACCCTTACTCGAAGCAGTTAAGAATGGACATGATCGTGTTGCTTCTTTACTTGTTAAAGAAGGGGCTACAATGAGGATAGAAAATGCTGGTAGTTTATTATGTACAGCAGTTGCAAGGGGAGATTCGGATTATCTCAAAAGGCTTTTATCTAATGGAATGGATCCAAATTTGAAAGATTATGATTACCGTACCCCTCTTCATGTTGCTGCAGCTGAAGGTTTACACTTCATGACAAAGTTGTTATTAGATGCTGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAACACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGGTGCAAAATCTGCTCAATTGTCAGAATTCCCATGTCCTTACCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCAAAAGAACAAAGAAGAAATGGAATTGTATTATGGGTTCCACAAACCATTGAAGAGCTAATTAAAGCAGCAGCAGAGCAAATAGGATTTTCTAGGGATTCTTGTATTTTATCCGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATAATCAGAAGCTGTATTTAGTCCATGAAAAACATTAA 2565 0.4086 MCEKKKVKVVTEEEDENGKQTTSCSRSSSSSSSSSSTDDREYEVQDLRDRLRSSRGSRFDLIEKEFGLNNGWRKFSRQALLHELVIFPDNRWYRAWTKFILVWAVYSSFFTPMEFAFFRGLPENLFVLDIIGQVAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSSFIFDFLGCMPWDLIYKFMVLGLTTRMTFYEQACGRKEAVRYLLWIRLYRARRVADFFQRLEKDIRVNYIVTRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQFESSYTDAALIQDIPISIRSKISQTLYLPYIEKVSLFKGCSSEFINQIVIKLHEEFFLPGEVVMEQGNVVDQLYFVCHGVLEEVGIAEDGSEETVSLLQPNSTFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILEIYFYDGKKVLDNLLEGKESLRGKQLESDVNFHIGKLEAELALKVNRAAFDGDLYQLKGLIRAGADANKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIKDNFGNTPLLEAVKNGHDRVASLLVKEGATMRIENAGSLLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAAAEGLHFMTKLLLDAGASVFTKDRWGNTPLDEARMCGNKNLIKLLEGAKSAQLSEFPCPYQEFTDKMHPKKCTVFPFHPWDPKEQRRNGIVLWVPQTIEELIKAAAEQIGFSRDSCILSEDAGKITDVDMIKDNQKLYLVHEKH. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01176 854 Pfam KHA, dimerisation domain of potassium ion channel 780 849 IPR021789 -
Seca8g01176 854 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g01176 854 FunFam Gated outwardly-rectifying K+ channel 644 770 - -
Seca8g01176 854 Pfam Ankyrin repeats (3 copies) 675 755 IPR002110 GO:0005515
Seca8g01176 854 Pfam Ankyrin repeats (3 copies) 580 666 IPR002110 GO:0005515
Seca8g01176 854 Pfam Ion transport protein 94 354 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca8g01176 854 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Seca8g01176 854 CDD CAP_ED 429 535 IPR000595 -
Seca8g01176 854 PRINTS Ankyrin repeat signature 606 621 IPR002110 GO:0005515
Seca8g01176 854 PRINTS Ankyrin repeat signature 718 732 IPR002110 GO:0005515
Seca8g01176 854 FunFam Potassium channel SKOR 94 354 - -
Seca8g01176 854 Pfam Cyclic nucleotide-binding domain 449 533 IPR000595 -
Seca8g01176 854 ProSiteProfiles cAMP/cGMP binding motif profile. 429 532 IPR000595 -
Seca8g01176 854 ProSiteProfiles Ankyrin repeat region circular profile. 702 734 - -
Seca8g01176 854 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515
Seca8g01176 854 ProSiteProfiles Ankyrin repeat region circular profile. 638 669 - -
Seca8g01176 854 ProSiteProfiles Ankyrin repeat profile. 702 734 IPR002110 GO:0005515
Seca8g01176 854 MobiDBLite consensus disorder prediction 1 42 - -
Seca8g01176 854 SMART cnmp_10 429 547 IPR000595 -
Seca8g01176 854 PRINTS EAG/ELK/ERG potassium channel family signature 129 139 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g01176 854 PRINTS EAG/ELK/ERG potassium channel family signature 253 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g01176 854 PRINTS EAG/ELK/ERG potassium channel family signature 301 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g01176 854 PRINTS EAG/ELK/ERG potassium channel family signature 345 354 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca8g01176 854 ProSiteProfiles KHA domain profile. 781 854 IPR021789 -
Seca8g01176 854 SUPERFAMILY Voltage-gated potassium channels 88 354 - -
Seca8g01176 854 Gene3D Jelly Rolls 400 563 IPR014710 -
Seca8g01176 854 SUPERFAMILY cAMP-binding domain-like 357 546 IPR018490 -
Seca8g01176 854 ProSiteProfiles Ankyrin repeat region circular profile. 605 637 - -
Seca8g01176 854 SUPERFAMILY Ankyrin repeat 578 756 IPR036770 -
Seca8g01176 854 Gene3D - 671 765 IPR036770 -
Seca8g01176 854 PANTHER POTASSIUM CHANNEL AKT1 65 851 IPR045319 GO:0005249|GO:0006813
Seca8g01176 854 Gene3D - 564 670 IPR036770 -
Seca8g01176 854 FunFam Potassium channel KAT2 417 554 - -
Seca8g01176 854 Gene3D - 96 355 - -
Seca8g01176 854 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Seca8g01176 854 SMART ANK_2a 605 634 IPR002110 GO:0005515
Seca8g01176 854 SMART ANK_2a 638 667 IPR002110 GO:0005515
Seca8g01176 854 SMART ANK_2a 669 698 IPR002110 GO:0005515
Seca8g01176 854 SMART ANK_2a 735 765 IPR002110 GO:0005515
Seca8g01176 854 SMART ANK_2a 702 731 IPR002110 GO:0005515
Seca8g01176 854 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01176 Seca-Chr8 17693669 17704635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01176 676 758 Ion Channels AT5G37500 36.449 2.61e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01176 K21867 - gmx:100814385 1462.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01176 8 17693669 17704635 Seca8g01176 8 17693669 17704635 ECH