Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01158 ATGAAGTCTTCACTGCCGGAACAAGCGTTTCTGGTTTGTTTCACGGTGTGGGTTTTCGCCATTGTCGCCGGCGCCGATCTAGCTTCCGACAGGGCGAGCCTTCTGGCTCTCCGAAGCGCCGTCGGAGGGCGAACCCTCCTCTGGAACATGACGGAGACTTCCCCGTGTTCGTGGACCGGCGTTCTCTGCGATAAGGGAAGGGTTACAGTGTTACGGTTACCGGGGATGGGTCTCTCCGGCAAGCTTCCGACGGGTTTAGGGAACCTGACCGAACTGCAGACACTTTCTCTACGGTTCAACGCTCTAACCGGACCTATTCCATCTGATTTCGCAAACCTCCAGGCTCTTCGGAATCTCTATCTTCACGGCAACTTCTTCTCCGGTGAAGTCCCTGATTTTCTGTTCAGTTTGCAGAACTTGGTGAGGTTGAATTTAGGTAGAAACAATTACACCGGAGAGATCTCTTCAAAGTTCAATAGCCTCACTCGTTTGGACACTCTTTACTTGGAGCAAAACGGGTTCACTGGTTCCATCCCTGACCTCAGTGTTCCTCCTCTTCACCAGTTCAACGTGTCGTTTAACCAGTTAAACGGGTCAATTCCTGAGAGGTTTTCGCGTTTGGAAGAAAGCGCGTTTGTTGGGAATTCCCTTTGTGGGAAGCCCCTTCAACTTTGCCCTGGCTCTGGGAAGAGCAGCAACAAGTTATCTGGGGGAGCTATTGCTGGGATTGTGATTGGTTCTTTGTTTGGTGTGTTGTTGATTCTGCTTCTTTTGTTTTTCTTGTGTAGAAAAAGAAAGGAAAGTGATGATGTGGCACCTAGCAAACGTGTTGAGGCTGAAGTGCAAGGTGAGAAGAGTGTTAGAGATGTTGAGAGTGGTGGTGGTGGTGGTGGTGTTGTGAGTAATTCAGCTTCAGCAACAGCATCAGCTTCAGCTGTGGAAAAGAGTGATATGAAGAGTTTGGTGTTTATTGGGAATGTGAATAGACCTTTTTCTTTGGATGAGTTACTGAGGGCTTCAGCTGAAGTGTTGGGAAAAGGGACCTTTGGAACCACTTACAAGGCCACATTGGAGATGGGAAGCAGTGTGGCTGTGAAGAGGTTGAAGGATGTTACTGCAACTGAGAGGGAATTCAGGGAGAAAATTGAGGAAGTGGGGAAGTTGGCTCATGAGAATTTGGTCCCACTTAGGGGTTATTATTTTAACAGGGATGAAAAGCTTATTGTGTATGATTACATGCCTATGGGAAGCTTATCTGCACTCTTACATGCAAACAATGGAGCTGGTAGGACTCCACTGAATTGGGAAACAAGGTCTGTCATAGCCCTTGGTGCTGCCCGTGGGATTGCATACCTTCATTCACAGGGTCCAACAGCCTCCCATGGAAATATCAAGTCATCAAATATCCTTCTCACCAAATCTTATGAAGCTCGTGTCTCTGACTTTGGCCTTGCATATCTTGCCCTCCCAACCTCCACTCCCAACCGCGTGTCCGGTTACCGTGCCCCAGAAGTCACTGATGCCCGGAAAGTTTCCCAGAAAGCTGATGTATATAGCTTTGGCATAATGCTTTTGGAGCTTCTCACAGGGAAGGCTCCAACTCATTCTTCACTGAATGAAGAAGGGGTAGACCTACCAAGATGGGTCCAATCTGTGGTTCAAGAGGAGTGGAACACTGATGTTTTTGACATGGAGCTTCTCAGGTACCAAAATGTTGAGGAGGAAATGGTCAACCTCTTGCAGCTTGCACTTGAATGCACTGCTCAATACCCTGATAAGAGACCTTCAATGGATGTGGTTGCAAACAGGATTGAAGAAATTTGTCATCCTAGTTTAGAGAAAGCAAAAGATGCAGCAGATAATGGGTTTACCCAACAGTAA 1881 0.4758 MKSSLPEQAFLVCFTVWVFAIVAGADLASDRASLLALRSAVGGRTLLWNMTETSPCSWTGVLCDKGRVTVLRLPGMGLSGKLPTGLGNLTELQTLSLRFNALTGPIPSDFANLQALRNLYLHGNFFSGEVPDFLFSLQNLVRLNLGRNNYTGEISSKFNSLTRLDTLYLEQNGFTGSIPDLSVPPLHQFNVSFNQLNGSIPERFSRLEESAFVGNSLCGKPLQLCPGSGKSSNKLSGGAIAGIVIGSLFGVLLILLLLFFLCRKRKESDDVAPSKRVEAEVQGEKSVRDVESGGGGGGVVSNSASATASASAVEKSDMKSLVFIGNVNRPFSLDELLRASAEVLGKGTFGTTYKATLEMGSSVAVKRLKDVTATEREFREKIEEVGKLAHENLVPLRGYYFNRDEKLIVYDYMPMGSLSALLHANNGAGRTPLNWETRSVIALGAARGIAYLHSQGPTASHGNIKSSNILLTKSYEARVSDFGLAYLALPTSTPNRVSGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSVVQEEWNTDVFDMELLRYQNVEEEMVNLLQLALECTAQYPDKRPSMDVVANRIEEICHPSLEKAKDAADNGFTQQ. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01158 626 FunFam Probable inactive receptor kinase At1g48480 413 615 - -
Seca8g01158 626 MobiDBLite consensus disorder prediction 272 287 - -
Seca8g01158 626 SUPERFAMILY L domain-like 47 207 - -
Seca8g01158 626 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Seca8g01158 626 Gene3D Phosphorylase Kinase; domain 1 302 412 - -
Seca8g01158 626 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01158 626 Pfam Protein kinase domain 341 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01158 626 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Seca8g01158 626 MobiDBLite consensus disorder prediction 272 301 - -
Seca8g01158 626 PANTHER OS05G0588300 PROTEIN 12 609 - -
Seca8g01158 626 FunFam pollen receptor-like kinase 1 307 412 - -
Seca8g01158 626 FunFam Probable inactive receptor kinase RLK902 27 182 - -
Seca8g01158 626 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Seca8g01158 626 Gene3D Transferase(Phosphotransferase) domain 1 413 623 - -
Seca8g01158 626 CDD STKc_IRAK 344 607 - -
Seca8g01158 626 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Seca8g01158 626 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01158 Seca-Chr8 17188190 17191351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01158 26 607 Receptor kinase-like Gene Family AT1G48480 58.414 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g01158 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01158 - - gmx:100801103 888.641