Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01147 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAAGAGGACAAGAAGCTCATCAACTTCATCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGCTAGCAGGGCTGTTAAGGTGTGGGAAGAGTTGTAGGCTAAGATGGACAAACTATCTTAGACCAGACTTAAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAAATAAAAAACCATTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTCACACACAAGCCACTCTCTAATGTAACTGAGCAAACCCAAAATCAACCAAATCACCAACAACAAGAAGAACAAGTAGAAGAAGAAATTCAGAACCAACCAGTTGACTTTGACCCCAAATGTGAATCTGAAATTAACCAGAATAAGGAAGCAGAGAAGCCAGAGACTTCATTTGAGTCATCAACTATCACTGAAACCAAAGAGGAGGAAGACAAAATTATTATGTCACCACTATTTGACACAATGGAGATAATGGATGTGTTCTGTACCGATGAAGTTCCAATTATAGAACCTGATGAGATTCTAATGCCATGTGCTCCTTCCTCTTCATCAACCTCATCATCATCATCTTCAAATTCAACCAATTTCCTTGAAGACTCTTCAAATTCAATTAATTTCCTTCAAGACCTTCAGCTACCAGATTTTGAGTGGTCTTGTAATAACAATAACAATGAAGATAACAATAATAGCAGTATGGCATTTTGGGATGAAGACTTCATTAGCAGCTTGAATTTTCTGATTAATGATGATGAAGATGATGATGGTGGTGATAGAAAACAACAATTTGATGGTTCTCTCAGTCAATACTCAAAAATGGTCATGGATCAAGAATCTTGGGCATATGGGTTGTTTTGA 1005 0.3831 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNVTEQTQNQPNHQQQEEQVEEEIQNQPVDFDPKCESEINQNKEAEKPETSFESSTITETKEEEDKIIMSPLFDTMEIMDVFCTDEVPIIEPDEILMPCAPSSSSTSSSSSSNSTNFLEDSSNSINFLQDLQLPDFEWSCNNNNNEDNNNSSMAFWDEDFISSLNFLINDDEDDDGGDRKQQFDGSLSQYSKMVMDQESWAYGLF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01147 334 SMART sant 66 114 IPR001005 -
Seca8g01147 334 SMART sant 13 63 IPR001005 -
Seca8g01147 334 Gene3D - 11 67 - -
Seca8g01147 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca8g01147 334 CDD SANT 16 61 IPR001005 -
Seca8g01147 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g01147 334 MobiDBLite consensus disorder prediction 228 246 - -
Seca8g01147 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g01147 334 PANTHER F14D16.11-RELATED 1 294 - -
Seca8g01147 334 MobiDBLite consensus disorder prediction 225 246 - -
Seca8g01147 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g01147 334 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca8g01147 334 Gene3D - 70 156 - -
Seca8g01147 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g01147 334 FunFam MYB transcription factor 11 67 - -
Seca8g01147 334 FunFam MYB-related transcription factor 70 130 - -
Seca8g01147 334 CDD SANT 74 112 IPR001005 -
Seca8g01147 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g01147 334 MobiDBLite consensus disorder prediction 133 195 - -
Seca8g01147 334 MobiDBLite consensus disorder prediction 165 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01147 Seca-Chr8 16941884 16944354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01147 1 306 MYB Transcription Factor Family AT1G66230 55.873 3.29e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g01147 Myb_DNA-binding 9.8e-13 CL0123