Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01139 ATGTCACTTGATGACAGGATAAAGAACAGGAGTAATAGAGGTAGAGGTAGAGGACGTGGCAGAGCCCAACCTGGCCGTGGGCCAGGTGGGACTCGTAATGGTGGAAGAATGGCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAATGCTCGGCCATCATCTTATGTCATTGCCAAGGCAAGCTCAAAAAATGTGGATACTTATACATGCTCTGGAATCTATTCTGTTTGCTTTTTCCAGTCCATTCGCAGAACCAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATACAAGGAGTAGAAGCTGGCACAAAGTTGTATGTTTCAAACTTAGACCATGGAGTAACTAATGAAGACATAAGGGAACTTTTCTCTGAGATTGGAGACTTAAAGCGCTATGCAGTTCATTATGATAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATTCGAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATAGGAAGCCCATGAAGATTGAGATTGTTGGTGCCAACGCAGAATGGGCAGTATCTGCTCGTGTAAATGTCACTGGAGTAAATGGGAAGAGGAAGAGGACGGTTGTAATGACGCCTGGAAGAGGTGGAACTGCACGCCCTGCTTTGCTTGGTCGTGGTGCTGCTAGGGGACGTCGTGGTGGTGCAAGGAGTGGGAGTGGACAAGGCCAAGGCCGAGGCCGTGGACGTGGCAGGCATGGAGGCCGAGGTCGTGGGAAAAAGGATTCTGTTGAGAAGTCAGCTGAGGAACTAGACAAGGAACTGGATACCTATCATGCTGAGGCTATGAACATCTCATGA 867 0.4717 MSLDDRIKNRSNRGRGRGRGRAQPGRGPGGTRNGGRMAGAVRRGPLMVNARPSSYVIAKASSKNVDTYTCSGIYSVCFFQSIRRTRPFPWQHDLFEDSLRAAGIQGVEAGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAVHYDKNGHPSGSAEVVYSRRSDAFAALKRYNNVLLDRKPMKIEIVGANAEWAVSARVNVTGVNGKRKRTVVMTPGRGGTARPALLGRGAARGRRGGARSGSGQGQGRGRGRGRHGGRGRGKKDSVEKSAEELDKELDTYHAEAMNIS. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01139 288 Pfam C-terminal duplication domain of Friend of PRMT1 230 282 IPR025715 -
Seca8g01139 288 MobiDBLite consensus disorder prediction 213 288 - -
Seca8g01139 288 CDD RRM_THOC4 111 185 - -
Seca8g01139 288 Coils Coil 263 283 - -
Seca8g01139 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Seca8g01139 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Seca8g01139 288 MobiDBLite consensus disorder prediction 260 281 - -
Seca8g01139 288 SUPERFAMILY RNA-binding domain, RBD 10 185 IPR035979 GO:0003676
Seca8g01139 288 Gene3D - 104 187 IPR012677 -
Seca8g01139 288 SMART FoP_duplication_2 215 288 IPR025715 -
Seca8g01139 288 SMART rrm1_1 112 184 IPR000504 GO:0003723
Seca8g01139 288 MobiDBLite consensus disorder prediction 1 43 - -
Seca8g01139 288 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01139 Seca-Chr8 16775959 16780682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01139 110 223 Eukaryotic Initiation Factors Gene Family AT1G71770 28.070 3.22e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01139 K12881 - gmx:100801491 335.495