Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01137 ATGGCCACTGAAGAGGTTAATAAACCTCCATCACATCCTCCATACCCTGAGATGATATTGAAAGCATTGGAAGCTCTGAATGAAGCCGGTGGATCAAACAAGTCAGCTATAGCAAAGTACATAGAAACTACTTATGGTGAGTTGCCAGAAGGCTCAACTCTTCTCTCTCAACACCTAAACAAGATGAAAGAGAGTGGGGAGCTTGTGTTCATGAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAGAAGAGGCCGTGGCAGACCACCCAAGCCTAAGGTTCCTTTGCCTCCAGGCACTGTTTTGACCCCACCAAGGCCAAGGGGTCGTCCTCCAAAGGACCCTAATGCCCCACCAAAGGCTAAGGTGTCCCCTGGAAGTGGCAGACCAAGAGGTAGGCCAAAGAAGATTGCTAGGTCACCGGCGGTGGCTGCTCCGGTGACTGTTCCGGTGGCTGTTCCGGCGGCTGCTCCGACCACTCCCTCTAGTGGAAGGCCGAGGGGTAGGCCTCCTAAGGTGAAGCCTCAATTGACAGAAGTCAGTGTTGAATCATAG 561 0.5205 MATEEVNKPPSHPPYPEMILKALEALNEAGGSNKSAIAKYIETTYGELPEGSTLLSQHLNKMKESGELVFMKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLTPPRPRGRPPKDPNAPPKAKVSPGSGRPRGRPKKIARSPAVAAPVTVPVAVPAAAPTTPSSGRPRGRPPKVKPQLTEVSVES. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01137 186 SMART h15plus2 9 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g01137 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g01137 186 SUPERFAMILY "Winged helix" DNA-binding domain 8 92 IPR036390 -
Seca8g01137 186 PANTHER HISTONE H1 8 177 - -
Seca8g01137 186 Pfam linker histone H1 and H5 family 12 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g01137 186 FunFam HMG-Y-related protein A 7 88 - -
Seca8g01137 186 PRINTS AT-hook-like domain signature 128 138 IPR017956 GO:0003677
Seca8g01137 186 PRINTS AT-hook-like domain signature 85 95 IPR017956 GO:0003677
Seca8g01137 186 PRINTS AT-hook-like domain signature 105 116 IPR017956 GO:0003677
Seca8g01137 186 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Seca8g01137 186 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Seca8g01137 186 SMART AT_hook_2 107 119 IPR017956 GO:0003677
Seca8g01137 186 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Seca8g01137 186 MobiDBLite consensus disorder prediction 93 121 - -
Seca8g01137 186 MobiDBLite consensus disorder prediction 70 186 - -
Seca8g01137 186 Gene3D - 7 84 IPR036388 -
Seca8g01137 186 CDD H15 9 69 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01137 Seca-Chr8 16731043 16732808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01137 18 89 Single Myb Histone (SMH) Gene Family AT1G49950 36.000 2.16e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01137 - - gmx:100793697 193.356