Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01116 ATGCATATGGAGAAGACCAAAGGGGTGAGAAAAGGCGCATGGACATACGAGGAAGACAAGCTACTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTGGTTCCTCAAAAAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAATCCCAACATTAACAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGCTACATAAACTCCTAGGCAACAGATGGTCATTGATTGCCGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTACTGGCACACACACTTAAGCAAGAAGAAGGTGACCTCTAATTATAACATGGAAGACAAGAAAGAAAAGGAGAAACCAATAAAGGAAACCATGAAACCTCATGAAGTTATAAAACCTCGACCTCGAACTTTTTCAAATAATTCACCATGGTTGAAGGGGAAACACATTCTTGCAAATGATGGTGATGGTGTAATTAGAGAGTGTGCTATGCCTGTAGTGGCTTCAAATAATGATAATGTTCCAACAGAGACAACTATGCTCCCACTTGGTGGTGATAGAGATTGTGATGCCGCACAGTCGTCTGCAATGTGGTGGGAGAGTTTGTTGAACTTTGATGGCGATGATGAGAAAGTTGGCACATGCTCTTTGTCAAATGAGAATTCCATCTTGGAACTTCCAAATGTGGAGAACTTCTTCACCCAAGGCCCCATTGGTAGTGACTGTTTATGGGATTCCAACCTTTGTGATTTTGATTCTCTTTGGGATCTTTAA 801 0.4157 MHMEKTKGVRKGAWTYEEDKLLKACINKYGVGKWHLVPQKAGLNRCRKSCRLRWLNYLNPNINRGSFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTSNYNMEDKKEKEKPIKETMKPHEVIKPRPRTFSNNSPWLKGKHILANDGDGVIRECAMPVVASNNDNVPTETTMLPLGGDRDCDAAQSSAMWWESLLNFDGDDEKVGTCSLSNENSILELPNVENFFTQGPIGSDCLWDSNLCDFDSLWDL. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01116 266 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Seca8g01116 266 SMART sant 10 60 IPR001005 -
Seca8g01116 266 SMART sant 63 111 IPR001005 -
Seca8g01116 266 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Seca8g01116 266 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Seca8g01116 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Seca8g01116 266 FunFam Myb transcription factor 11 63 - -
Seca8g01116 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 135 - -
Seca8g01116 266 CDD SANT 69 109 IPR001005 -
Seca8g01116 266 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Seca8g01116 266 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Seca8g01116 266 Gene3D - 2 64 - -
Seca8g01116 266 CDD SANT 13 58 IPR001005 -
Seca8g01116 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Seca8g01116 266 Gene3D - 66 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01116 Seca-Chr8 16351973 16353525 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01116 4 215 MYB Transcription Factor Family AT1G66370 50.228 3.19e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g01116 Myb_DNA-binding 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01116 - K09422 tpra:123921946 301.597