Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01114 ATGGAGAAGACGAGAGGGGTGAGAAAAGGCGCATGGACATACGAGGAAGACAACCTGCTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTGGTTCCTGAAAAAGCAGGATTAAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAATCCCAACATCAACAGAGGAAGCTTTACTGAGGATGAAGTTGATATGATACTAAGGTTACATAAACTCCTAGGGAACAGGTATTTTTTTTTTTTTGGTAGATCATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTAAAGAACTACTGGCACACACACTTAAGCAAGAAGAAGGTGACCTCTAGTTATAACATTGATGACAAGAATGAAAAAGAGAAACCAATAAAGGAAACCATGAGACCTCATGAAGTTATAAAACCTCGACCTCTAACTTTATCAAATGATTCACCGTTGTTGAAGGGAAAACACATTCTTGCAAATAATGATGGTGGTGTAACTAGAGAGTGTTCTATGCCTCTAGTGGCATCAAATGATTATAATGTTCCGACTGCGGAGTGTGACACACAAATAACTATGCTTCCACTTGGGGGTGATAGAGATTGTGATGCACAACCATATCTTGCTAATGCCCCACATTCTGCAATGTGGTGGGAGAGCTTGTTGAACTTGGATGACAATGTAGGCGATGGTGAGAAAGTTGGCACAAGTTATTTGTCAAATGAGAATTCCATCTTGGAGCTTCCAAATGTGGAGAACTTCTTCACCCAAGGCCCCATTGGTGCTGACTGTTGTTGGGATTCCACCGTTTGGGATTTCGATGCTCTTTGGGATCTTTAA 861 0.4135 MEKTRGVRKGAWTYEEDNLLKACINKYGVGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRGSFTEDEVDMILRLHKLLGNRYFFFFGRSWSLIAARLPGRTANDVKNYWHTHLSKKKVTSSYNIDDKNEKEKPIKETMRPHEVIKPRPLTLSNDSPLLKGKHILANNDGGVTRECSMPLVASNDYNVPTAECDTQITMLPLGGDRDCDAQPYLANAPHSAMWWESLLNLDDNVGDGEKVGTSYLSNENSILELPNVENFFTQGPIGADCCWDSTVWDFDALWDL. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01114 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 139 - -
Seca8g01114 286 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Seca8g01114 286 ProSiteProfiles Myb-like domain profile. 57 115 IPR001005 -
Seca8g01114 286 SUPERFAMILY Homeodomain-like 6 111 IPR009057 -
Seca8g01114 286 Gene3D - 63 143 - -
Seca8g01114 286 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Seca8g01114 286 Pfam Myb-like DNA-binding domain 62 115 IPR001005 -
Seca8g01114 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 119 IPR017930 -
Seca8g01114 286 CDD SANT 11 56 IPR001005 -
Seca8g01114 286 CDD SANT 64 115 IPR001005 -
Seca8g01114 286 FunFam Myb transcription factor 9 61 - -
Seca8g01114 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Seca8g01114 286 SMART sant 61 117 IPR001005 -
Seca8g01114 286 SMART sant 8 58 IPR001005 -
Seca8g01114 286 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01114 Seca-Chr8 16293548 16295437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01114 2 232 MYB Transcription Factor Family AT1G66370 47.699 4.27e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g01114 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01114 - K09422 tpra:123921946 280.411