Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01113 ATGATTCTAAGGTTACATAAACTTCTAGGAAACAGATGGTCCTTGATTGCTGCAAGGCTTCCGGGTAGAACAGCTAATGATGTGAAGAACTACTGGCACACACACTTGAGCAAGAAGAAGGTGACCTCTAATTATATCAAGGAAAACAAGAAAGAAAAGGAGAAACCAATAAAGGAAACCGTGAAACCTCATGAAGTTATAAAACCTCGACCTCGAATTTTTTCAAATAATTCACCATGGTTGAAGGGGAAACACGTTCTTGAAAATGATGGTGATGTAATTAGAGAGTGTGCTATGCCTCTAGTGGCTTCAAATGATGATAATGTTCCGATTGCAAAGTGTGACACACAAACAACTATGCTCCAACTTGGGGGTGATGGAGATTGTGATGCACAGCCATATCTTGCTAATGCCCCACATTCTGCAATGTGGTGGGAGAGCTTGTTGAACTTGGATGACAATGTAGGCGATGGTGAGAAAGTTGGCACATGTTCTTTGTCAAATGAGAATTCCATCTTGGAGCTTCCAAATGTGGAGAACTTCTTCAACCAAGGCCCCATTGGTACTGACTGCTATTGGGATTGCAACGTTTGTGATTTCGATGCTCTTTGGGATCTTTAA 621 0.4138 MILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTSNYIKENKKEKEKPIKETVKPHEVIKPRPRIFSNNSPWLKGKHVLENDGDVIRECAMPLVASNDDNVPIAKCDTQTTMLQLGGDGDCDAQPYLANAPHSAMWWESLLNLDDNVGDGEKVGTCSLSNENSILELPNVENFFNQGPIGTDCYWDCNVCDFDALWDL. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01113 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
Seca8g01113 206 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
Seca8g01113 206 Pfam Myb-like DNA-binding domain 2 36 IPR001005 -
Seca8g01113 206 CDD SANT 1 36 IPR001005 -
Seca8g01113 206 Gene3D - 1 65 - -
Seca8g01113 206 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 55 - -
Seca8g01113 206 ProSiteProfiles Myb-like domain profile. 1 36 IPR001005 -
Seca8g01113 206 SMART sant 1 38 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01113 Seca-Chr8 16249654 16252294 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01113 1 152 MYB Transcription Factor Family AT1G66370 39.752 1.27e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g01113 Myb_DNA-binding 2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01113 - K16166 tpra:123921946 175.252