Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01104 ATGATGGTTTTCTCCCAAGGAACCTGCACTGTCAGTGACACTGACATCATGGATCCTTCCAATGCCCCAGATACTCCTCCACAAGTTTCCTCTGCAGTTGCAGATAACTTCTCTGACTACAAAAGGCTCAAATTCAGAACCTTTTTGAGAAAAATGATATGGGAGTTTGCTTTTGCATGTGTTGCTGTTCCTTGTGGTGGCAAAGACGATGACAAAGGCTTCAAAAAGAAAACTTTGGAGCACAACAAGGTGTGGCTTCTGGCTGAGTCTGGTGGGTGTGGAGCAGAATTGGCAAGTGCTGAGCCTCAATCGGTTCACTCATCTTTCAGGTTCAGCTTCCGTTCTCAGGTTGAGGTTGAAACCTTGAACTTGAATTCTTCTGCTGCTGCTGCTGCAACCGTTTTGATGGTGAATTTGGAGTATGAATCTCGAGCAAGGGAGATTATGAAATGGAGGAAGATGGAGTCATTGGAGAGATGCATATCCCCAGTGGCCAACACTTTGATCAGGTTCAACTATGATGAAATTCTATCTGCTACTCGCAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGAGGCTTGAGCTGTGTTTTCAGAGGAAAAGTTGGGTTTTTTAGGACTAGTGTTGCAATTAAACGGTTGAAGAATGATGACAAAGAGTGTGCCAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCAAAATCCAAATGTTGTTCCCCTTGTGGGATTTTGTATTGACTCAGAGGAGGGTTTGTTCTTGGTTTACAAGTATGTATCAGGGGGTAGCTTAGAGCATCACTTGCATGGAAAGAAGAAGAGTTTGAAGGGTGGTTTACCACTTCCATGGTCTGTGAGGTATAAAGTTGCAGTTGGGATTACAGAAGCTGTGGCTTATCTTCATAATGGAACAGAAAGATGTGTTGTTCACAGAGACATTAAGCCTTCAAACATTCTACTTTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTTCAGCACCTTCAGTTCCTTTCCTTTGTAAAACTGTCAAAGGAACATTTGGTTATTTGGCACCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTAGGAGTTGTTTTGTTGGAACTCATAACTGGCCGAAAGCCAATTGAAGCAGAAAGGCCTCCAGGAGAGGAGAACTTGATCTTATGGGTGAGTTAA 1224 0.4248 MMVFSQGTCTVSDTDIMDPSNAPDTPPQVSSAVADNFSDYKRLKFRTFLRKMIWEFAFACVAVPCGGKDDDKGFKKKTLEHNKVWLLAESGGCGAELASAEPQSVHSSFRFSFRSQVEVETLNLNSSAAAAATVLMVNLEYESRAREIMKWRKMESLERCISPVANTLIRFNYDEILSATRNFSKGRVLGRGGLSCVFRGKVGFFRTSVAIKRLKNDDKECAKAFCRELMIASSLQNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKSLKGGLPLPWSVRYKVAVGITEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELITGRKPIEAERPPGEENLILWVS. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01104 407 PANTHER OS08G0249100 PROTEIN 142 406 IPR046958 -
Seca8g01104 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Seca8g01104 407 Gene3D Transferase(Phosphotransferase) domain 1 261 407 - -
Seca8g01104 407 FunFam probable serine/threonine-protein kinase PBL7 143 260 - -
Seca8g01104 407 SMART serkin_6 183 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01104 407 Gene3D Phosphorylase Kinase; domain 1 168 260 - -
Seca8g01104 407 SUPERFAMILY Protein kinase-like (PK-like) 171 403 IPR011009 -
Seca8g01104 407 Pfam Protein kinase domain 184 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01104 407 ProSiteProfiles Protein kinase domain profile. 183 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01104 Seca-Chr8 16004256 16006364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01104 170 406 Trihelix Transcription Factor Family AT1G70460 43.460 7.86e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca8g01104 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01104 - - adu:107481060 555.058