Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01102 ATGGATTGGAGGCCTAGTGTTGGCAAGGAATTTGATGATCCTGAAGAAGCCTGGAACTTTTGGGTAGAATACGGTTCAAAAATGGGTTTTGGAGTTAGAAAAAATTACTTCAACAAAAGGAAGGAAGATGGTTCCATTACATCTTGTAGATTTGTTTGTTGTAAGGAGGGGAAGAAGAATAAGAAGTCATCCTTGTTTAAAAAGCCCAGGGCTGATACAAGAACTGAGTGCCAAGAAAGAATAGCACTTGTTGCGAAAAATGGCAAGTTTGTAATTCATGAGTTTGTAGAGAACCATAACCACCTTTTACAACTTGCAAAAACAACCCATATGCTAGCATCACACCGTAAATTTTCAGAAGTTCAAGCATATGAGATTGAAATGGCAGAGGACTCTGGATTGATGCAAAAGGCTTCATTTCAGCTTATGAGCACACATGTAGGAGGTAGAGCTAATCTTGGATATACACGGTTGGATGCACATGGGAAGAAGAAGCCTCAAACTTTGTTCACTGACCAAGACCAAGCAATGGCTAAAGCACTAGCTCAGGTGATGCCAAAGACTCGACATGGTTTATGCACATGGCATTTAATGCAGAATGGAATCAAACATCTTGGAAACTTGATGAAGAGAGGAAGCCATTTCTTGACTGATTTCAAAAGGTGTATTTATGATTATAACCAAGAAGCGAAGTTTGAGGCGGCTTGGAGTAAATTGGTCATAGAATTTAATGTCAATGAAAATAACTGGGTGAAATCAATGTATGCTATTAAGGAAAAGTGGGCAGCATGTCACATGAAGGAAGCCTTCACCTTAGGTATGCGAAGCACTCAACTTAGTGAGAGTTTGAACTCAAATTTTAAGGCTTGCATGAGACTGAACCTCAATGTCACCCAATTCTTCAAGGACATCGAAAGAGTTGTTGAGGAGAAGCGATACAATGAGTTGGTTTATGAATATGAGTCTCGACATAAACTTGCAAATTGTAGAAAATTTGAGACATTTGGGATACTTTGTTGCTATGCATTGAAGGTCTTCGAGGCAAATGATATTAAACTTGTTCCCAATCAATACATCCTAAAGAGGTGGATAAGAGATGCACGCAATGGTATTATACTGGACACAAGGAAAAATGAGGTTGTGGCAGATCCCAAATTAGATAGCACACGACGATATAAGCAAGTTTTCCTCTCTATGATTAGATTAGTAGTTGAGGTCTCTACTTCTGAAAAATTACACCAAATTGTAGAACAAGGAATTCATGACTTGTGGAAGAAAGTAAAAGAGGTTCGGTTAGAAGAAAATATAATGGCCAATGATGATTATAGTGCTCCGATACTAGCAAGAGAAGATGAGACACAACTAAAGGGGTTTAAGAAGCGAGTTGGGCCGAGGAGACACAAACGACTAAAAGGTTGGGTTGAGCTTCAATCTACAAAAAAAAGAAAGGCTAAAGCTCTAAAGGCTACACCAAGTCAGCAACATATGGTATATAATTTTATGGTTATAACAATATTTGTGTTACCTTTCTTGCCTATTTATTAA 1545 0.3825 MDWRPSVGKEFDDPEEAWNFWVEYGSKMGFGVRKNYFNKRKEDGSITSCRFVCCKEGKKNKKSSLFKKPRADTRTECQERIALVAKNGKFVIHEFVENHNHLLQLAKTTHMLASHRKFSEVQAYEIEMAEDSGLMQKASFQLMSTHVGGRANLGYTRLDAHGKKKPQTLFTDQDQAMAKALAQVMPKTRHGLCTWHLMQNGIKHLGNLMKRGSHFLTDFKRCIYDYNQEAKFEAAWSKLVIEFNVNENNWVKSMYAIKEKWAACHMKEAFTLGMRSTQLSESLNSNFKACMRLNLNVTQFFKDIERVVEEKRYNELVYEYESRHKLANCRKFETFGILCCYALKVFEANDIKLVPNQYILKRWIRDARNGIILDTRKNEVVADPKLDSTRRYKQVFLSMIRLVVEVSTSEKLHQIVEQGIHDLWKKVKEVRLEENIMANDDYSAPILAREDETQLKGFKKRVGPRRHKRLKGWVELQSTKKRKAKALKATPSQQHMVYNFMVITIFVLPFLPIY. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01102 514 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 428 IPR031052 GO:0006355
Seca8g01102 514 Pfam MULE transposase domain 159 200 IPR018289 -
Seca8g01102 514 Pfam FAR1 DNA-binding domain 19 103 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01102 Seca-Chr8 15983946 15986060 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g01102 FAR1 4.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01102 - - aprc:113855580 345.125