Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01100 ATGGCTCTGGCCAATGACAAAATTCCTTGTGCTTCAAGCATGAGCAGCAGAAAGTTTCAAACTTGTGCTCTTGATGAGTCTGCTATGGAGATTTCTCCTCATGGGGTCAAGGATTATCAAAAATCTCTTGCTGAAGAGGAAGATGGATCACAGAGTACTAATGGCCTCAGCAATGATTCAGCTTCAGCTATAACCCATTCTTCTCCTCTATGTGGCAGTGCAAATGGGTATGTTTATAAGAGCTCAAATTATCAACTTGAAGAAGCAGAATCTCTGATTAATTTCAAAGCCAATGAGTATAGCAACCTCATGCAAGGTAGTGAATCTGTTCTTAGCTTTCAGCAGAGCTGGTTGGTCTCCAATGAGAACAATTTGAACCAATGGAATCATATTAGTCCTAAAGGCACCACAAACTTGAGCATGGTTCAGGATTTCACTTGCTTTGAATCTTCCAGTGGCTATAGCTCCATGTTTAACAATGCAAAAGAGAAACAACATGGTGAAAGTTCATATGGGTGGCTATACTCTGAACCAAATGTCCCTGGTGATAGTCTCAAGGAGTCATCAAATCAAGAATCAGTCTTAAAGAAGCGCTCTTCAATGGTTGAGAACATGCAAAATTCCAATGCCAAGAAGCCATGCACAACTGCAAGCAAAACAGCAAAACCCAAGTCAAACCCATCTAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTTAAGATCCTACAAGAACTTGTACCCAACGGCTCCAAGGTGGGTTTCTTAAACTAG 795 0.4101 MALANDKIPCASSMSSRKFQTCALDESAMEISPHGVKDYQKSLAEEEDGSQSTNGLSNDSASAITHSSPLCGSANGYVYKSSNYQLEEAESLINFKANEYSNLMQGSESVLSFQQSWLVSNENNLNQWNHISPKGTTNLSMVQDFTCFESSSGYSSMFNNAKEKQHGESSYGWLYSEPNVPGDSLKESSNQESVLKKRSSMVENMQNSNAKKPCTTASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVGFLN. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01100 264 MobiDBLite consensus disorder prediction 35 61 - -
Seca8g01100 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 264 IPR011598 GO:0046983
Seca8g01100 264 MobiDBLite consensus disorder prediction 182 233 - -
Seca8g01100 264 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 260 IPR045843 GO:0003700|GO:0006355
Seca8g01100 264 MobiDBLite consensus disorder prediction 182 242 - -
Seca8g01100 264 MobiDBLite consensus disorder prediction 46 61 - -
Seca8g01100 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 258 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01100 Seca-Chr8 15909095 15911402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01100 76 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 34.500 5.02e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01100 - - gmx:106795957 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01100 8 15909095 15911402 Seca8g01100 8 15909095 15911402 ECH
Seca8g01100 8 15909095 15911402 Seca6g02312 6 84684771 84686676 PCT