Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01097 ATGGAATTGGAAAGTACTCCTTCTCCTCCGCCGTGTGATGGCACTGAAATAGAGGCAACGCCGGTGGCCGTACGGCGAGCCATGGAGCTGCTTCAGATGGACGATCCAGATTTGAAGATCCAAGCCGCGCGTGAAATTCGCCGTCTCACTAAGAACTCTCACCGTTGCCGCCGTCAGCTCCGTCAAGCCGTTGCTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCAAATGAACCCGCGCTTCTCGCCTTGCTTAACCTCGCCGTCCAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTAGAACCAATAGTTAGTTTCCTCAAGTCTCAAAATCCCAATATGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTACAACCAACAAACCAATTATTAGTGCTTATGGCACCATTCCTCTTCTTGTGGAGATTCTAAGAGATGGAAGCTCACAAGCTAAAGTTGATTCTGTAATGGCTCTGTCCAATTTATCAACACACCCTGACAACCTCAGCATCATTCTTGAAACAAATCCAATCCCTCTAATAGTTGATCTTCTCAAGACCTGTAAGAAATCCTCAAAAACAGCTGAAAAATGCTGTGGTTTGATAGAGTCCTTGGTGGGTTATGATGAGGGAAGAACTTCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGGACTCCTCAAAGTAGGGAACATGCTGTTGGTGCACTGCTTACAATGTGCCAAAGTGATAGGTGTAAATACAGAGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGTTAACTGTTCAAGGAACACCAAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAATCCCCTTATTCAAGATCTGAAATTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTTAGCATGGAACAGAGTTTGAGACATTTACAACAAAGAGCTCTTGTATGCACCACAACTAGTGATATTCCTATTACTAGTTGTGCTTCTGAAGTTTCTTCAAAATGA 1140 0.443 MELESTPSPPPCDGTEIEATPVAVRRAMELLQMDDPDLKIQAAREIRRLTKNSHRCRRQLRQAVAPLVSMLRVDSPESNEPALLALLNLAVQDEKNKINIVEAGALEPIVSFLKSQNPNMQEYATASLLTLSASTTNKPIISAYGTIPLLVEILRDGSSQAKVDSVMALSNLSTHPDNLSIILETNPIPLIVDLLKTCKKSSKTAEKCCGLIESLVGYDEGRTSLTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRSEIEPDTLENIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTTTSDIPITSCASEVSSK. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01097 379 FunFam U-box domain-containing protein 4 12 360 - -
Seca8g01097 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 104 IPR000225 GO:0005515
Seca8g01097 379 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Seca8g01097 379 Gene3D - 13 365 IPR011989 -
Seca8g01097 379 PANTHER U BOX DOMAIN-CONTAINING 16 304 - -
Seca8g01097 379 SUPERFAMILY ARM repeat 24 329 IPR016024 -
Seca8g01097 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Seca8g01097 379 SMART arm_5 134 174 IPR000225 GO:0005515
Seca8g01097 379 SMART arm_5 175 217 IPR000225 GO:0005515
Seca8g01097 379 SMART arm_5 52 91 IPR000225 GO:0005515
Seca8g01097 379 SMART arm_5 93 133 IPR000225 GO:0005515
Seca8g01097 379 SMART arm_5 219 259 IPR000225 GO:0005515
Seca8g01097 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 141 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01097 Seca-Chr8 15854915 15861091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01097 24 301 U-box Gene Family AT2G23140 32.143 1.29e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01097 - - gmx:100793971 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01097 8 15854915 15861091 Seca8g01097 8 15854915 15861091 ECH
Seca8g01097 8 15854915 15861091 Seca6g02310 6 84590645 84594682 PCT