Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01096 ATGGCCACCAAATCTGAAGAGATCCAAGAAGAAGACATGTCAATGTCAAGTATGGAAGAAGGTCTTGTTACCCCAAGCATTATACAACGTTGTTGTTCATCAAACTACGTTGTAACTTTGATACAGAAGGTGATTGCAGAATTGATCGGCACATATTTTGTGATATTTGCTGGTTGTGGGGCTGTAGCAGTGAATAAAATCTTTGAATCTGTCACGTTTCCAGGAATTTGTGTCACATGGGGACTCATTGTAATGGTCATGTCTTACTCTGTTGGTCATATCTCTGGAGGTCACTTCAACCCTGCAGTTACAATCACTTGGGCTATCTTTCGCAGGGTACCCTTTAAAGAGGTGCCACTATACATTGTTGCTCAGTTGCTGGGTTCCACACTTGCCAGTGGCACATTGGCACTAATGTTTGATGTCACACAAAAATCTTACTTTGGAACTCTACCAGTTGGATCCAATAGCCAGTCTCTAGTTGTTGAAATCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCTGTTTCAACAGATGACAGAGCGGTGGGTCAATTGGCAGGAGTTGTGGTTGGAATGACTATAATGTTGAATGTCTTTGTGGCAGGGCCTATATCAGGAGCCTCCATGAACCCAGCAAGAAGTATTGGTCCTGCAATTGTGAAACATGTTTACAAAGGATTATGGATATACATAGTTGGTCCAATTATTGGAGCCATAGCTGGAGCATTTGTCTATAACTTACTTAGATCTACAGACAGGCCACTTATAGAGTTAACCAGAGGACCATCCCTGAGTTGA 804 0.4179 MATKSEEIQEEDMSMSSMEEGLVTPSIIQRCCSSNYVVTLIQKVIAELIGTYFVIFAGCGAVAVNKIFESVTFPGICVTWGLIVMVMSYSVGHISGGHFNPAVTITWAIFRRVPFKEVPLYIVAQLLGSTLASGTLALMFDVTQKSYFGTLPVGSNSQSLVVEIIITFLLMFVISAVSTDDRAVGQLAGVVVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHVYKGLWIYIVGPIIGAIAGAFVYNLLRSTDRPLIELTRGPSLS. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01096 267 PANTHER AQUAPORIN NIP2-1 16 255 IPR034294 -
Seca8g01096 267 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Seca8g01096 267 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 SUPERFAMILY Aquaporin-like 37 258 IPR023271 -
Seca8g01096 267 Gene3D Glycerol uptake facilitator protein. 3 257 IPR023271 -
Seca8g01096 267 CDD MIP 42 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01096 267 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01096 Seca-Chr8 15762410 15764379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01096 1 266 Major Intrinsic Protein MIP AT5G37810 63.060 4.40e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01096 K09874 - twl:119988879 375.17