Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01087 ATGGAAAATCAGAAACCGCAAATAGAAATGGTGAAGAACCCTAATAAAAAAAGAGCCCTCTACCAGCAGCTCCGTTCTCCTTCGCCAGCGACGTCGCAGCAGCTCCGGTCATTCACAGCAGCTCCGTTCACGTTCACGTTCGCGCACAGCTCCGTTCCCCGTTCACGTTCGCAGGCGCAGCAGCTGTTCTTCCTCGCAACGTCTCTGTTCTTCCTCGCAGTGGAAGAGACAATAGAAGACCACAGAGGAAGAAACTCAGGCAATCATCGATGGCTACAAGCATTTGAGTATCTTTCATCGGAGGGGCCTCAATGTCGAAAGTTTCTTCAAGTAAGCTTCACTGGTTTAACACAAATAGGCCGTGAGATAATGAAGGTTGCAGCTAGCAGTAACTTGAAAAGAGTTTCACTTGAATTAGGAGGCAAATCACCCCCCATAATTTTTTATGATGCTGATATAGTCAAAGCTGCTGAGCTTGCTCTATTTGGCCTCCTATTTAACAAGGTGAAATTACTTTCAAGAGATCCTTTCTTTTCAAACAACGTCCCCTTGACTCTTGCAAAACAGATTATTGCAATCTCAGATATTTTACTGCAAGCAATTGTAATGGGTATTATCAGGAGTTGCTTCTCTTTCATAGCAGGGACAGTCATTGGGGTTTACTTGGCTCAGAACTATCAAATTCCTAACCTCAGGAAGCTAGCTGACACTGCGTTGATCGAGAAGAAGGTGATGATGATGATAACTACGATTAGAATATCTATGACACTACATTGGAATCAGGTTCTTGTTTTGGGATTTTCTTCAATTTGCTGCATGTCAGTTTTGTAA 831 0.4344 MENQKPQIEMVKNPNKKRALYQQLRSPSPATSQQLRSFTAAPFTFTFAHSSVPRSRSQAQQLFFLATSLFFLAVEETIEDHRGRNSGNHRWLQAFEYLSSEGPQCRKFLQVSFTGLTQIGREIMKVAASSNLKRVSLELGGKSPPIIFYDADIVKAAELALFGLLFNKVKLLSRDPFFSNNVPLTLAKQIIAISDILLQAIVMGIIRSCFSFIAGTVIGVYLAQNYQIPNLRKLADTALIEKKVMMMITTIRISMTLHWNQVLVLGFSSICCMSVL. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01087 276 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 110 169 - -
Seca8g01087 276 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 109 140 IPR016162 GO:0016491
Seca8g01087 276 Pfam Aldehyde dehydrogenase family 109 167 IPR015590 GO:0016491
Seca8g01087 276 Pfam Domain of unknown function (DUF4535) 208 241 IPR027854 -
Seca8g01087 276 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 141 167 IPR016163 GO:0016620
Seca8g01087 276 SUPERFAMILY ALDH-like 111 167 IPR016161 GO:0016491
Seca8g01087 276 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 137 144 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01087 Seca-Chr8 15665936 15668235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01087 110 171 Aldehyde Dehydrogenase Gene Family AT3G24503 66.129 1.31e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01087 K12355 - gmx:100791396 88.5817